View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20790_low_7 (Length: 394)
Name: NF20790_low_7
Description: NF20790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20790_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 375
Target Start/End: Complemental strand, 45231854 - 45231491
Alignment:
| Q |
12 |
atgaagttacaaacagaaacgatcttgagacctcaaaataaggcgtcatcacctcgcttccctttatctcctttgggtnnnnnnncttgtacagataaaa |
111 |
Q |
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| T |
45231854 |
atgaagtcacaaacagaaacgatcttgagacttcaaaataaggcgtcatcacctcgcttccctttatctcctttgggtaaaaaaacttgtacagataaaa |
45231755 |
T |
|
| Q |
112 |
aattgggagaacacggagattttgatactatgttgagtgatgtcaatctgtttactcctgataatatccttgatatgaatgagtattggactagtcctgc |
211 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45231754 |
aattgggagaacgcagagattttgatactatgttgagtgatgtcaatctgtttactcctgataatatccttgatatgaatgagtattggactagtcctgc |
45231655 |
T |
|
| Q |
212 |
tagctttcctcctcggcatgcaaagttatatggatcggtgaataggttgccaattagaaggtccctggtcggttcatttgaggagtcgctattgtccggt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45231654 |
tagctttcctcctcggcatgcaaagttatatggatcggtgaataggttgccaattagaaggtccctggtcggttcatttgaggagtcactattgtccggt |
45231555 |
T |
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| Q |
312 |
cgtttaccgtctgagaaagttagtctggttggccttatttctcatatatcgtgaacctctcctg |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45231554 |
cgtttaccgtctgagaaagttagtctggttggccttatttctcatatatcgtgaacctctcctg |
45231491 |
T |
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