View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20790_low_8 (Length: 394)
Name: NF20790_low_8
Description: NF20790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20790_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 30518338 - 30518431
Alignment:
| Q |
206 |
ctatcattttttctctcgcaataattgatagaaatttacgccttaaaataaataagtgtacaatctaaaagttgaactctggttcatacattct |
299 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||| || |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
30518338 |
ctatcattttttctctcgcaataacttatataaattcacaccttaaaataaataagtgtacaatttaaaagttgaactatggtttatacattct |
30518431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 30518224 - 30518277
Alignment:
| Q |
156 |
atcaatataataagtgtaaaatctattatttctcaatatatgtaaaaacactat |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
30518224 |
atcaatataacaagtgtaaaatctattatttctcaatacatgtaaaaacgctat |
30518277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University