View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20790_low_9 (Length: 385)

Name: NF20790_low_9
Description: NF20790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20790_low_9
NF20790_low_9
[»] chr1 (9 HSPs)
chr1 (56-205)||(6690667-6690816)
chr1 (57-205)||(46285096-46285244)
chr1 (57-203)||(29859275-29859421)
chr1 (57-159)||(21791102-21791204)
chr1 (120-205)||(44234226-44234311)
chr1 (269-321)||(6690880-6690932)
chr1 (59-138)||(27651720-27651799)
chr1 (269-318)||(46284942-46284991)
chr1 (74-138)||(16959784-16959848)
[»] chr2 (6 HSPs)
chr2 (57-205)||(4776617-4776765)
chr2 (57-205)||(122458-122606)
chr2 (269-321)||(4776828-4776880)
chr2 (59-138)||(8911462-8911541)
chr2 (59-138)||(20202930-20203009)
chr2 (74-138)||(19386629-19386693)
[»] chr8 (6 HSPs)
chr8 (57-205)||(5881956-5882104)
chr8 (57-205)||(25128880-25129028)
chr8 (57-203)||(39861237-39861383)
chr8 (57-203)||(36731636-36731782)
chr8 (276-321)||(5881316-5881362)
chr8 (59-138)||(17450806-17450885)
[»] chr4 (4 HSPs)
chr4 (57-205)||(52363301-52363450)
chr4 (59-192)||(42883027-42883160)
chr4 (269-321)||(52363186-52363238)
chr4 (74-138)||(21824806-21824870)
[»] chr3 (10 HSPs)
chr3 (57-205)||(30833971-30834119)
chr3 (57-205)||(28908187-28908335)
chr3 (57-137)||(51829087-51829167)
chr3 (269-321)||(51827747-51827799)
chr3 (269-321)||(28908070-28908122)
chr3 (269-321)||(30833854-30833906)
chr3 (58-138)||(53948939-53949019)
chr3 (168-205)||(51827905-51827942)
chr3 (59-132)||(38798608-38798681)
chr3 (129-161)||(51828506-51828538)
[»] scaffold0155 (1 HSPs)
scaffold0155 (57-205)||(1394-1542)
[»] chr5 (1 HSPs)
chr5 (57-205)||(42519935-42520083)
[»] chr7 (5 HSPs)
chr7 (59-138)||(37422838-37422917)
chr7 (59-138)||(30660135-30660214)
chr7 (74-138)||(30469759-30469823)
chr7 (74-138)||(43334383-43334447)
chr7 (74-138)||(46427778-46427842)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 6690667 - 6690816
Alignment:
Q  56 gaaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcatt 155  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6690667 gaaatgctgttaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcatt 6690766  T
Q  156 cattatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  6690767 cattatcccaggtactctctataaattaattttctttaggttcttctaag 6690816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 46285244 - 46285096
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46285244 aaatgctcctaatattattgtgttgggtgtttaagcatttgtgcttatctttcgtttagtagaatatgttctttttaattttggaagcaatcgttcattc 46285145  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    | |||  ||| |||||||||||||| |||||||||||||||||||||||    
T  46285144 agtattccaggtactctctataaatcaattttctttaggttcttctaag 46285096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 203
Target Start/End: Original strand, 29859275 - 29859421
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    |||||||||||||||| |||| |||||||||| |||||||||| ||| ||||||||||| || ||||||||||| ||||||||   ||||||||||| ||    
T  29859275 aaatgctgctaatattcttgtatcgggtgttttagcatttgtgttttgctttcgtttagcagcatatgttctttataattttgcgtgcaatcgttcactc 29859374  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttcta 203  Q
    ||||||   | | |||| ||||||| |||||||||| | ||||||||    
T  29859375 attatccttggtgctctttataaatcaattttctttggattcttcta 29859421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 21791102 - 21791204
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    |||||||| ||||||| |||| |||||||||| || ||||||| ||| |||| |||||| || ||||||||||| |||||||||  ||||||||||||||    
T  21791102 aaatgctgttaatattcttgtatcgggtgttttaggatttgtgttttgcttttgtttagtagcatatgttctttataattttgggtgcaatcgttcattc 21791201  T
Q  157 att 159  Q
    |||    
T  21791202 att 21791204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 44234311 - 44234226
Alignment:
Q  120 atatgttctttttaattttggaagcaatcgttcattcattatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    |||||||||||||||||||||  | |||||||||||||||||| |   | || | ||||||| |||||||||| ||||||||||||    
T  44234311 atatgttctttttaattttgggtgtaatcgttcattcattatcccttgtgctttttataaatcaattttctttgggttcttctaag 44234226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 6690880 - 6690932
Alignment:
Q  269 atgacggtgaatagtgtaaaccgtaaagaaaccataataatactgtcatataa 321  Q
    ||||| ||||| |||||||||||||||||||||||||||||| | ||||||||    
T  6690880 atgacagtgaacagtgtaaaccgtaaagaaaccataataatattatcatataa 6690932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 27651720 - 27651799
Alignment:
Q  59 atgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||||||||||||| || | |||| ||||  |||||||||| ||| ||||||||||| || ||| |||||||||||||||    
T  27651720 atgctgctaatattcttttatcggatgttctagcatttgtgttttgctttcgtttagtagcataagttctttttaatttt 27651799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 46284991 - 46284942
Alignment:
Q  269 atgacggtgaatagtgtaaaccgtaaagaaaccataataatactgtcata 318  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||| |||||    
T  46284991 atgacagtgaatagtgtaaactgtaaagaaagcataataatactatcata 46284942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 16959784 - 16959848
Alignment:
Q  74 ttgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||| |||||||||  |||||||||| ||| |||||| |||  || |||||||||||||||||||    
T  16959784 ttgtatcgggtgttctagcatttgtgttttgctttcgcttaatagcatatgttctttttaatttt 16959848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 4776617 - 4776765
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4776617 aaatgttgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagtagaatatgttctttttaattttggaagcaatcgttcattc 4776716  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  4776717 attatcccaggtactctctataaatcaattttctttaggttcttctaag 4776765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 122606 - 122458
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    |||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||  ||||||||||||||||||||||  ||||||||||||    
T  122606 aaatgctgctaatattattgtgtcgggtgttttagcatctgtgttttgctttcgtttagtagcgtatgttctttttaattttggaactaatcgttcattc 122507  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    |||||| ||| | |||| ||||||| |||||||||| | ||||| ||||    
T  122506 attatcccaggtgctctttataaatcaattttctttggtttcttgtaag 122458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 4776828 - 4776880
Alignment:
Q  269 atgacggtgaatagtgtaaaccgtaaagaaaccataataatactgtcatataa 321  Q
    ||||| |||||||||||||||||||||||||||||||||||| | ||||||||    
T  4776828 atgacagtgaatagtgtaaaccgtaaagaaaccataataatattatcatataa 4776880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 8911462 - 8911541
Alignment:
Q  59 atgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||||||||||||| |||| |||  ||||  |||||||||| ||| ||||||||||| || ||| |||||||||||||||    
T  8911462 atgctgctaatattcttgtatcgaatgttctagcatttgtgttttgctttcgtttagtagcataagttctttttaatttt 8911541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 20202930 - 20203009
Alignment:
Q  59 atgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||||||||||||| |||| |||| ||||  | |||||||| ||| ||||||||||| || ||| ||||||||| |||||    
T  20202930 atgctgctaatattcttgtatcggatgttctaacatttgtgttttgctttcgtttagtagcataagttcttttttatttt 20203009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 19386693 - 19386629
Alignment:
Q  74 ttgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||| |||||||||  |||||||||| ||| |||||| |||  || |||||||||||||||||||    
T  19386693 ttgtatcgggtgttctagcatttgtgttttgctttcgcttaatagcatatgttctttttaatttt 19386629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 7e-62; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 5882104 - 5881956
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5882104 aaatgctgctaatattattgtgtcgggtgtttaaacatttatgcttttctttcgtttagtagaatatgttctttttaattttggaagcaatcgttcattc 5882005  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    |||||  ||| |||||||||||||| |||||||||||||||||||||||    
T  5882004 attattccagatactctctataaatcaattttctttaggttcttctaag 5881956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 25129028 - 25128880
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||  ||  |||| ||||||||||||||||| |||||||||||||    
T  25129028 aaatgctgctaatattattgtgtcgggtgttttagcatttgtgttttactttcgtttattagcgtatgctctttttaattttggaaccaatcgttcattc 25128929  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    |||||| ||| |||||| ||||||| |||||||||| | ||||| ||||    
T  25128928 attatcccaggtactctttataaatcaattttctttggtttcttgtaag 25128880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 39861383 - 39861237
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    |||||||||||||||| |||| |||||||||| |||||||||| ||| ||||||||||| || ||||||||||| ||||||| |  ||||||||||||||    
T  39861383 aaatgctgctaatattcttgtatcgggtgttttagcatttgtgttttgctttcgtttagtagcatatgttctttataattttaggtgcaatcgttcattc 39861284  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttcta 203  Q
    ||||||   | | |||| ||||||| |||||||||| ||||||||||    
T  39861283 attatccttggtgctctttataaatcaattttctttgggttcttcta 39861237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 36731782 - 36731636
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    |||||||||||||||| |||| |||||||||| | |||||||| ||| ||||||||||| || ||||||||||| |||||||||  |||||||| |||||    
T  36731782 aaatgctgctaatattcttgtatcgggtgttttaacatttgtgttttgctttcgtttagtagcatatgttctttataattttgggtgcaatcgtccattc 36731683  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttcta 203  Q
    ||||||   | | |||| ||||||| ||||||| || ||||||||||    
T  36731682 attatccttggtgctctttataaatcaattttccttgggttcttcta 36731636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 5881362 - 5881316
Alignment:
Q  276 tgaatagtgt-aaaccgtaaagaaaccataataatactgtcatataa 321  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  5881362 tgaatagtgttaaaccgtaaagaaaccataataatactatcatataa 5881316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 17450806 - 17450885
Alignment:
Q  59 atgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||||||||||||| |||| |||| ||||  | |||||||| ||| ||||||||||| || ||| ||||||||| |||||    
T  17450806 atgctgctaatattcttgtatcggatgttctaacatttgtgttttgctttcgtttagtagcataagttcttttttatttt 17450885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 52363450 - 52363301
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  52363450 aaatgctgctaatattattgtgtcgggtgtttaagcatttgcgcttttctttcgtttagtagaatatgttcttttaaattttggaagcaatcgttcattc 52363351  T
Q  157 attatctcagttactctctataaattaa-ttttctttaggttcttctaag 205  Q
    |||||  ||| |||||||||||||| || |||||||||||||||| ||||    
T  52363350 attattccaggtactctctataaataaatttttctttaggttcttttaag 52363301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 42883160 - 42883027
Alignment:
Q  59 atgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattcat 158  Q
    |||||||||||||| |||| |||| | ||| |||||| ||||||| ||||||||||   | ||||||| |||||||||||||  ||||||||||||||||    
T  42883160 atgctgctaatattcttgtatcggatattttagcattcgtgctttgctttcgtttattggcatatgttatttttaattttgggtgcaatcgttcattcat 42883061  T
Q  159 tatctcagttactctctataaattaattttcttt 192  Q
    |||| ||| |||||| ||||||| ||||||||||    
T  42883060 tatcccagatactctttataaataaattttcttt 42883027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 52363238 - 52363186
Alignment:
Q  269 atgacggtgaatagtgtaaaccgtaaagaaaccataataatactgtcatataa 321  Q
    ||||| |||||||||||||||||||||||||||||||||||| | ||||||||    
T  52363238 atgacagtgaatagtgtaaaccgtaaagaaaccataataataatatcatataa 52363186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 21824806 - 21824870
Alignment:
Q  74 ttgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||| |||||||||  |||||||||| ||| |||||| |||  || |||||||||||||||||||    
T  21824806 ttgtatcgggtgttctagcatttgtgttttgctttcgcttaatagcatatgttctttttaatttt 21824870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 30834119 - 30833971
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| || |||||||  ||||||||||||||||||||||||||||    
T  30834119 aaatgctgctaatattattgtgtcgggtgtttaagtatttttgtttttctttcgtttagtagcatatgtttattttaattttggaagcaatcgttcattc 30834020  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    |||||| ||| |||||| ||||||| ||||||||||||| | |||||||    
T  30834019 attatcccaggtactctttataaatcaattttctttagggttttctaag 30833971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 28908335 - 28908187
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    ||||||||||||||||||||||||  |||||| | |||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  28908335 aaatgctgctaatattattgtgtcaagtgttttatcatttgtgtttttctttcgtttagtagcatacgttctttttaattttggaagcaatcgttcattc 28908236  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    |||||| ||| |||||| ||||||| |||||| ||||| ||||||||||    
T  28908235 attatcccaggtactctttataaatcaattttatttagtttcttctaag 28908187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 51829167 - 51829087
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51829167 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagtagaatatgttctttttaattt 51829087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 51827799 - 51827747
Alignment:
Q  269 atgacggtgaatagtgtaaaccgtaaagaaaccataataatactgtcatataa 321  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  51827799 atgacagtgaatagtgtaaaccgtaaagaaaccataataatactatcatataa 51827747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 28908122 - 28908070
Alignment:
Q  269 atgacggtgaatagtgtaaaccgtaaagaaaccataataatactgtcatataa 321  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||    
T  28908122 atgacagtgaatagtgtaaactgtaaagaaaccataataatactatcatataa 28908070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 30833906 - 30833854
Alignment:
Q  269 atgacggtgaatagtgtaaaccgtaaagaaaccataataatactgtcatataa 321  Q
    ||||| ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  30833906 atgacagtgaatagtgtaaactgtgaagaaaccataataatactatcatataa 30833854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 53948939 - 53949019
Alignment:
Q  58 aatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    ||||||||||||||| |||| |||| ||||  |||||||||| ||| ||||||||||| || ||| ||||||||| |||||    
T  53948939 aatgctgctaatattcttgtatcggatgttctagcatttgtgttttgctttcgtttagtagcataagttcttttttatttt 53949019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 51827942 - 51827905
Alignment:
Q  168 tactctctataaattaattttctttaggttcttctaag 205  Q
    |||||||||||||| |||||||||||||||||||||||    
T  51827942 tactctctataaatcaattttctttaggttcttctaag 51827905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 38798681 - 38798608
Alignment:
Q  59 atgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttcttttt 132  Q
    |||||||||||||| |||| |||| ||||  |||||||||| ||| ||||||||||  || ||| |||||||||    
T  38798681 atgctgctaatattcttgtatcggatgttctagcatttgtgttttgctttcgtttaatagcataagttcttttt 38798608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 51828538 - 51828506
Alignment:
Q  129 ttttaattttggaagcaatcgttcattcattat 161  Q
    ||||||||||||||||||| |||||||||||||    
T  51828538 ttttaattttggaagcaattgttcattcattat 51828506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 1394 - 1542
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||  ||  ||||||||||||||||||||||  ||||||||||||    
T  1394 aaatgctgctaatattattgtgtcgggtgttttagcatttgtgttttgctttcgtttaatagcgtatgttctttttaattttggaactaatcgttcattc 1493  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    |||||| ||| | |||| ||||||| |||||||||| | ||||| ||||    
T  1494 attatcccagatgctctttataaatcaattttctttggtttcttgtaag 1542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 42520083 - 42519935
Alignment:
Q  57 aaatgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaattttggaagcaatcgttcattc 156  Q
    |||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| || |||||||||||||||||||||||  |||| |||||||    
T  42520083 aaatgctgctaatattattgtgtcgggtgttttagcatctgtgttttgctttcgtttagtagcatatgttctttttaattttggaactaatcattcattc 42519984  T
Q  157 attatctcagttactctctataaattaattttctttaggttcttctaag 205  Q
    |||||| ||| | |||| ||||||| |||||| ||| | ||||| ||||    
T  42519983 attatcccaggtgctctttataaatcaattttatttggtttcttgtaag 42519935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 37422838 - 37422917
Alignment:
Q  59 atgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||||||||||||| |||| |||| ||||  |||||||||| ||| ||||||||||| || ||| ||||||||| |||||    
T  37422838 atgctgctaatattcttgtatcggatgttctagcatttgtgttttgctttcgtttagtagcataagttcttttttatttt 37422917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 30660135 - 30660214
Alignment:
Q  59 atgctgctaatattattgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||||||||||||| |||| |||| ||||  |||||||||| ||| |||||||||||  | ||| ||||||||| |||||    
T  30660135 atgctgctaatattcttgtatcggatgttctagcatttgtgttttgctttcgtttagtggcataagttcttttttatttt 30660214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 30469759 - 30469823
Alignment:
Q  74 ttgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||| |||||||||  |||||||||| ||| |||||| |||  || |||||||||||||||||||    
T  30469759 ttgtatcgggtgttctagcatttgtgttttgctttcgcttaatagcatatgttctttttaatttt 30469823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 43334383 - 43334447
Alignment:
Q  74 ttgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||| |||||||||  |||||||||| ||| |||||| |||  || |||||||||||||||||||    
T  43334383 ttgtatcgggtgttctagcatttgtgttttgctttcgcttaatagcatatgttctttttaatttt 43334447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 46427778 - 46427842
Alignment:
Q  74 ttgtgtcgggtgtttaagcatttgtgcttttctttcgtttagaagaatatgttctttttaatttt 138  Q
    |||| |||||||||  |||||||||| ||| |||||| |||  || |||||||||||||||||||    
T  46427778 ttgtatcgggtgttctagcatttgtgttttgctttcgcttaatagcatatgttctttttaatttt 46427842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University