View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20791_high_13 (Length: 310)
Name: NF20791_high_13
Description: NF20791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20791_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 12814139 - 12814421
Alignment:
| Q |
8 |
caccacagaccacaaccttccctccaaatggaattgttttattttttgcgtccacctctttcattatctctctgaaggttctatcaacggcctcaaagca |
107 |
Q |
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| T |
12814139 |
caccaaagaccacaaccttccctccaaatggaattgttttatttttcgcgtccacctccttcattatgtctctgaaggttctatcaacggcctcaaagca |
12814238 |
T |
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| Q |
108 |
aaatcgatgcagcattggtgcttcatcccatattataagcttggctttcactatcaatttcccaaggggggaatctagttcaatggtacatgtagaagat |
207 |
Q |
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| T |
12814239 |
aaatcgatgcaacattggtgcttcatcccatattataagcttggctttcactatcaatttcccaaggagggaatctggttcaatggtacatgtagaagat |
12814338 |
T |
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| Q |
208 |
tcatttattagtagaggaaagccaaacctcgaatgtgttgtcctcccccctggtattaacaatgcagctatgcctgatgatgt |
290 |
Q |
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| T |
12814339 |
tcatttattagtagaggaatgcaaaacctcgaatgtgttgtccttccccctggtattaacaatgcagttatgcctgatgatgt |
12814421 |
T |
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Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 16969099 - 16968824
Alignment:
| Q |
8 |
caccacagaccacaaccttccctccaaatggaattgttttattttttgcgtccacctctttcattatctctctgaaggttctatcaacggcctcaaagca |
107 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||| || |||||| ||||||||||| |
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| T |
16969099 |
caccaaagaccacaaccttccctccaaatggaatttttttatttttcaggtccacctccttcattatgtctcaaaa------atcaacagcctcaaagca |
16969006 |
T |
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| Q |
108 |
aaatcgatgcagcattggtgcttcatcccatattataagcttggctttcactatcaatttcccaaggggggaatctagttcaatggtacatgtagaagat |
207 |
Q |
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| T |
16969005 |
aaacctatgcatcattggtgcttcatcctatattataagcttggctttcactactaatttcccaaggggggaatccggttcaatggtacacgtagaagat |
16968906 |
T |
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| Q |
208 |
tcatttattagtagaggaaagccaaacctcgaatgtgttgtcctcccccctggtattaacaatgcagctatgcctgatgatg |
289 |
Q |
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||||||||||||| ||||| || |||||||||||| | |||||| || |||||||||||||||||||||||||||||||||| |
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| T |
16968905 |
tcatttattagtacaggaatgcaaaacctcgaatgggctgtccttccacctggtattaacaatgcagctatgcctgatgatg |
16968824 |
T |
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