View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20791_high_4 (Length: 370)
Name: NF20791_high_4
Description: NF20791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20791_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 90 - 341
Target Start/End: Original strand, 22372603 - 22372850
Alignment:
| Q |
90 |
ccccaacaccagcttaaaaactaaacaaaaagataagttaataaacagtggtaaatgatcaattaacatctctaaacgaagattagtcaacgcttacaca |
189 |
Q |
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| T |
22372603 |
ccccaacaccagcttaaaaactaaacaaaaagataagttaataaacagtggtaaatgatcaattaacatctctaaacgaagattagtcaacgcttacaca |
22372702 |
T |
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| Q |
190 |
acaacagtagaaacttggtatctataacataataacccagaaagctaagatataaataaaaacaaataattgatttaacaattaaaacaaagaattaacc |
289 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22372703 |
acaacagtagaaacttcgtatctataacataataacccagaaagctaagat----ataaaaacaaataattgatttaacaattaaaacaaagaattaacc |
22372798 |
T |
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| Q |
290 |
tgacgaatcattttatgcttgagaattttctctttatcaagtatcttgatag |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22372799 |
tgacgaatcattttatgcttgagaattttctctttatcaagtatcttgatag |
22372850 |
T |
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