View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20791_high_7 (Length: 344)
Name: NF20791_high_7
Description: NF20791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20791_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 37321459 - 37321781
Alignment:
| Q |
1 |
acttataatatgactggttgcggtaaggaacgattggcaccactatttttctatttctggctgctttttggtggttgtggtgtgggagaaataagttgta |
100 |
Q |
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| T |
37321459 |
acttataatatgactggttgcggtaaggaacgattggcaccactatttttctatttctggctgcttgttggtggttgtggcgtgagagaaataagttgta |
37321558 |
T |
|
| Q |
101 |
ttttgcgaatgaattggtgtcttccttcaccttaaggcacaccacttttaattatatgctcagttgttatcgaagtgtttccttaaacaggggcatgaat |
200 |
Q |
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| T |
37321559 |
ttttgcaaatgaattggtgtcttccttcaccttaaggcacaccacttttaattatatgctcagttgttatcgaagtgtttccttaaacaggggcatgaat |
37321658 |
T |
|
| Q |
201 |
ctgccacgaggtcggtaaagtggaatgtgtccaatgtgaatggcatgattttaaatgttgatgggtgcagtcttggtaagcccggtgtctctgggtttgg |
300 |
Q |
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| T |
37321659 |
ctgccacgaggtcggtaaagtggaatgtgtcctatgtgaatggcatgattttatatgttgatgggtgcagtcttggtaaccccggtgtctccgggtttgg |
37321758 |
T |
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| Q |
301 |
gggtttgcttcgtaatgatgatg |
323 |
Q |
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| T |
37321759 |
cggtttgcttcgtaatgatgatg |
37321781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 27573117 - 27573013
Alignment:
| Q |
219 |
agtggaatgtgtccaatgtgaatggcatgattttaaatgttgatgggtgcagtcttggtaagcccggtgtctctgggtttgggggtttgcttcgtaatga |
318 |
Q |
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||||||||| | ||||| | ||||||||||||| ||||||||||| | ||||| ||||| | ||| | || || ||||||||||||| |||||| || |
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| T |
27573117 |
agtggaatgcgcacaatgcggatggcatgattttgaatgttgatggaagtagtctcggtaatcacggcatttcaggatttgggggtttgcatcgtaagga |
27573018 |
T |
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| Q |
319 |
tgatg |
323 |
Q |
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||||| |
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| T |
27573017 |
tgatg |
27573013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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