View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20791_low_1 (Length: 432)
Name: NF20791_low_1
Description: NF20791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20791_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 37320646 - 37321061
Alignment:
| Q |
1 |
attccttgagccttacccacaagtttcgagtcacgttcaggaccagccgtcaatgggtcatccatggccacaacggtcccgaatggcaacgcatttttta |
100 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
37320646 |
attccttgagccttacccacaagttttgattcacgttcgggtccagccgtcaaggggtcatccatcgccacaactgtcccgaatggcaaggcatttttta |
37320745 |
T |
|
| Q |
101 |
ccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320746 |
ccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaa |
37320845 |
T |
|
| Q |
201 |
acccagcattgttggggataggcttttatagtaattagtggcagtggcaagggatattatggagacgaaagtaaggttcaaagaaatgagaattgtggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320846 |
acccagcattgttggggataggcttttatagtaattagtggcagtggcaagggatattatggagacgaaagtaaggttcaaagaaatgagaattgtggaa |
37320945 |
T |
|
| Q |
301 |
catgatgagaattttgccatggttgatgtgaatgaactaagaatgctttatgttgttgttcttgttgaggatccgataatgaacttataagaatgctatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
37320946 |
catgatgagaattttgccatggttgatgtgaatgaactaagaatgcttt---ttgttgttgttgttgaggatcggataatgaacttataagaatgctatt |
37321042 |
T |
|
| Q |
401 |
actatgaaaaatgtctctg |
419 |
Q |
| |
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||||||||||||||||||| |
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| T |
37321043 |
actatgaaaaatgtctctg |
37321061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 37317067 - 37317414
Alignment:
| Q |
1 |
attccttgagccttacccacaagtttcgagtcacgttcaggaccagccgtcaatgggtcatccatggccacaacggtcccgaatggcaacgcatttttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37317067 |
attccttgagccttacccacaagtttcgagtcacgttcaggaccagcagtcaatgggtcatccatggccacaacggtcccgaatggcaacgcatttttta |
37317166 |
T |
|
| Q |
101 |
ccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37317167 |
ccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaagtgaaggtgagtgaatttctcttcttgaaa |
37317266 |
T |
|
| Q |
201 |
acccagcattgttggggataggcttttatagtaattagtggcagtggcaagggatattatggagacgaaagtaaggttcaaagaaatgagaa---ttgtg |
297 |
Q |
| |
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||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| || || |
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| T |
37317267 |
acccaacattgttggggataggttttgatagtaattagtggcagtggcaagggatattatagagaggaaagtaaggttcaaagaaattagaagagttatg |
37317366 |
T |
|
| Q |
298 |
gaacatgatgagaattttgccatggttgatgtgaatgaactaagaatg |
345 |
Q |
| |
|
|| ||| |||| |||||||||||||||||| |||||||| ||||||| |
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|
| T |
37317367 |
gagaatgttgaggattttgccatggttgatgcgaatgaacaaagaatg |
37317414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 37324627 - 37324968
Alignment:
| Q |
1 |
attccttgagccttacccacaagtttcgagtcacgttcaggaccagccgtcaatgggtcatccatggccacaacggtcccgaatggcaacgcatttttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
37324627 |
attccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcatttttta |
37324726 |
T |
|
| Q |
101 |
ccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaa |
200 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
37324727 |
ccttgccattaggctcagctataaataccatgcttggttttggtcccgacacaatgtcatgaaagtaaaagtgaaggtgagtgaatttctcttcttgaaa |
37324826 |
T |
|
| Q |
201 |
acccagcattgttggggataggcttttatagtaattagtggcagtggcaagggatattatggagacgaaagtaaggttcaaagaaatgagaa---ttgtg |
297 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||| || || |
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| T |
37324827 |
acccagcattgttggagataggctttgatagtaattagtggccgtggtaagggatattatggagaggaaagtaaggttcaaagaaattagaagagttatg |
37324926 |
T |
|
| Q |
298 |
gaacatgatgagaattttgccatggttgatgtgaatgaactaa |
340 |
Q |
| |
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| ||| |||| ||||||||||||||| ||| |||||||||| |
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| T |
37324927 |
gggaatgttgaggattttgccatggttg-tgttaatgaactaa |
37324968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 37306722 - 37306978
Alignment:
| Q |
1 |
attccttgagccttacccacaagtttcgagtcacgttcaggaccagccgtcaatgggtcatccatggccacaacggtcccgaatggcaacgcatttttta |
100 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||| ||| |||||| || |||||||||||||| || ||||||||||| | | |||| |
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|
| T |
37306722 |
attccttgagctttacccacgagtttcgagtcaagttcaggcccaatcgtcaacggatcatccatggccaccactgtcccgaatggaagagagttttcag |
37306821 |
T |
|
| Q |
101 |
ccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaa |
200 |
Q |
| |
|
||||||| |||||||| ||||| | || |||| | ||| || ||| || | |||||| || || || |||||||| |||||||||||||||||||| |
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| T |
37306822 |
ccttgccgttgggctcggctactatcactgtgcttgctttggggccttccataacgtcgtggaaatagaagtgaaggtgggtgaatttctcttcttgaaa |
37306921 |
T |
|
| Q |
201 |
acccagcattgttggggataggcttttatagtaattagtggcagtggcaagggatat |
257 |
Q |
| |
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||||| || | ||| |||| |||||| |||||||| ||||| || || |||||||| |
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|
| T |
37306922 |
acccaacaaagctggagataagcttttgtagtaattggtggctgtagccagggatat |
37306978 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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