View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20792_high_5 (Length: 312)

Name: NF20792_high_5
Description: NF20792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20792_high_5
NF20792_high_5
[»] chr2 (2 HSPs)
chr2 (161-248)||(10426255-10426342)
chr2 (136-168)||(10426213-10426245)
[»] scaffold0727 (2 HSPs)
scaffold0727 (34-75)||(3826-3867)
scaffold0727 (100-138)||(3630-3668)
[»] chr4 (2 HSPs)
chr4 (34-75)||(23551691-23551732)
chr4 (100-138)||(23551495-23551533)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 10426255 - 10426342
Alignment:
Q  161 tcacatttcttctcactctcaaaaatggacaaatcaagcacgctagagtatatcaatcaaatgttccccaacggtaatctcaatttca 248  Q
    ||||| || ||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||    
T  10426255 tcacagtttttctcactctcaacaatggacaaatcaagcgcgttagagtatatcaatcaaatgttccccaacggtaatttcaatttca 10426342  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 10426213 - 10426245
Alignment:
Q  136 taatagatccatctactactctcattcacattt 168  Q
    |||||||||||||||||||||||||||||||||    
T  10426213 taatagatccatctactactctcattcacattt 10426245  T

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Target: scaffold0727 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 3826 - 3867
Alignment:
Q  34 gaatttttagtacaatcaattaatttctatagttagatccat 75  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  3826 gaatttttaatacaatcaattaatttctatagttagatccat 3867  T

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Target: scaffold0727; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 3668 - 3630
Alignment:
Q  100 atgatgacaaacttagccgcagaaataatacaacaataa 138  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  3668 atgatgaaaaacttagccgcagaaataatacaacaataa 3630  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 23551691 - 23551732
Alignment:
Q  34 gaatttttagtacaatcaattaatttctatagttagatccat 75  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  23551691 gaatttttaatacaatcaattaatttctatagttagatccat 23551732  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 23551533 - 23551495
Alignment:
Q  100 atgatgacaaacttagccgcagaaataatacaacaataa 138  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  23551533 atgatgaaaaacttagccgcagaaataatacaacaataa 23551495  T

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