View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20792_high_6 (Length: 258)
Name: NF20792_high_6
Description: NF20792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20792_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 49543378 - 49543603
Alignment:
| Q |
18 |
accagtttggtttggtttgattcaaaaccatttttcaaccagtcctacttgtttcctattattcaattattaacaatcaatttttgttgttcaattttgg |
117 |
Q |
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| T |
49543378 |
accagtttggtttggtttgattcaaaaccatttttcaaccagtcctacttgtttcctattattcaattattaacaatcaatttttattgttcaattttgg |
49543477 |
T |
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| Q |
118 |
ctaatgactgagtatggatgagtcaaaaactttggctgatatgaaaagagtatggatttctaagaagttttcaacatttatgaagcttctccttctaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49543478 |
ttaatgactgagtatggatgagtcaaaaactttggctgatatgaaaagagtatggatttctaagaagttttcaacatttatgaagcttctccttctaaaa |
49543577 |
T |
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| Q |
218 |
acttggccttctttatgcaatctctg |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
49543578 |
acttggccttctttatgcaatctctg |
49543603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 27 - 243
Target Start/End: Original strand, 47609150 - 47609362
Alignment:
| Q |
27 |
gtttggtttgattcaaaaccatttttcaaccagtcctacttgtttcctattattcaattattaacaa-tcaatttttgttgttcaattttggctaatgac |
125 |
Q |
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| T |
47609150 |
gtttgattttattcaaaaccatttttcaaccggtcctacttgtttcctattattcgattattaacaaataaatttttgttgttcgattttgattaatgac |
47609249 |
T |
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| Q |
126 |
tgagtatggatgagtcaaaaactttggctgatatgaaaagagtatggatttctaagaagtttt-caacatttatgaagcttctccttctaaaaacttggc |
224 |
Q |
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| T |
47609250 |
ag------gatgagtcaaaaactttggctgatatgaagagagtatggatttctaagaagttttcctacatttatgaagcttctccttctaaaaacttggc |
47609343 |
T |
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| Q |
225 |
cttctttatgcaatctctg |
243 |
Q |
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| T |
47609344 |
cttctttatgcaatctctg |
47609362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 52892946 - 52892727
Alignment:
| Q |
19 |
ccagtttggtttggtttgattcaaaaccatttttcaaccagtcctacttgtttcctattattcaattattaacaatcaatttttgttgttcaattttggc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52892946 |
ccagtttggtttggtttgattcaaaaccatttttcaaccagtcctacttgtttcctattatttggttattaacaatcaatttttgttgttcaattttggt |
52892847 |
T |
|
| Q |
119 |
taatgactgagtatggatgagtcaaaaactttggctgatatgaaaagagtatggatttctaagaagtttt-caacatttatgaagcttctccttctaaaa |
217 |
Q |
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||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||| |||||||| | |
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| T |
52892846 |
taatgac------aggatgagtcgaaaactttggctgatatgaagagagtatggatttctaagaaattttcctacatttatgaagcttgtccttctacca |
52892753 |
T |
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| Q |
218 |
acttggccttctttatgcaatctctg |
243 |
Q |
| |
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| ||||||||| |||||||||||||| |
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| T |
52892752 |
agttggccttcattatgcaatctctg |
52892727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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