View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20792_low_1 (Length: 540)
Name: NF20792_low_1
Description: NF20792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20792_low_1 |
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| [»] scaffold0205 (1 HSPs) |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 21179185 - 21178676
Alignment:
| Q |
18 |
aaattgagttaataaagaatgagtttattccaatcgctaattgaaaggattagtggtattgagatagaatcaagttgtatgaatgtaatagtattgtact |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179185 |
aaattgagttaagaaagaatgagtttattccaatcgctaattgaaaggattagtggtattgagatagaatcaagttgtatgaatgtaatagtattgtact |
21179086 |
T |
|
| Q |
118 |
acattgtttggattagaatgtagatatgtgatgagattagatgatatccattttgtaatattctatttaagatattagtttttatgcatctataatgtaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21179085 |
acattgtttggattagaatgtagatatgtgatgagattagatgatatccattttgtaatattctatttaagatattagtttttatgcatctatgatgtaa |
21178986 |
T |
|
| Q |
218 |
aattctttacacatgcatttaatttaatataagggtgcatttgacctgcaaaagaatgaaacaaaggataagacaactcttggtgtatagtatatgaatt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| | | |||||| |
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| T |
21178985 |
aattctttacacatgcatttaatttaatataagggtgcatttgacctgcaaaagaatgaaacacaagataagacaactcttgatgtataatgtttgaatt |
21178886 |
T |
|
| Q |
318 |
gtaaaactgatttaaggacaagataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaacttttatttctct |
417 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
21178885 |
gtaaaactgatttaaggacaagacaaattggaggtaagggataacacaaaaactgaaatttgtgtcgttcgttaaaccacaacacaacttttatttctct |
21178786 |
T |
|
| Q |
418 |
atagctgcgtgtctttacactaggtgttccactcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaaagtatccatctt |
517 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21178785 |
atagctgcgtgtctttacactaggtgttccattcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaaagtatccatctt |
21178686 |
T |
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| Q |
518 |
gacacaggtt |
527 |
Q |
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|||||||||| |
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| T |
21178685 |
gacacaggtt |
21178676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 406 - 527
Target Start/End: Original strand, 2776 - 2897
Alignment:
| Q |
406 |
ttttatttctctatagctgcgtgtctttacactaggtgttccactcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2776 |
ttttatttctctatagctgcgtgtctttacactaggtgttccattcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
2875 |
T |
|
| Q |
506 |
agtatccatcttgacacaggtt |
527 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2876 |
agtatccatcttgacacaggtt |
2897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 406 - 527
Target Start/End: Original strand, 28360643 - 28360764
Alignment:
| Q |
406 |
ttttatttctctatagctgcgtgtctttacactaggtgttccactcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
505 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28360643 |
ttttatttctctatagctgcgtgtctttacactagatgttccattcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
28360742 |
T |
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| Q |
506 |
agtatccatcttgacacaggtt |
527 |
Q |
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||||||||||||| |||||||| |
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| T |
28360743 |
agtatccatcttggcacaggtt |
28360764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 406 - 528
Target Start/End: Original strand, 18273870 - 18273992
Alignment:
| Q |
406 |
ttttatttctctatagctgcgtgtctttacactaggtgttccactcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
505 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18273870 |
ttttatttctctatagctgtgtgtctttaatctaggtgttccattcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
18273969 |
T |
|
| Q |
506 |
agtatccatcttgacacaggttc |
528 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
18273970 |
agtatccatcttgacacaggttc |
18273992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 409
Target Start/End: Original strand, 37695503 - 37695573
Alignment:
| Q |
339 |
gataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaactttt |
409 |
Q |
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|||||||||||||||| || || ||||||||||| |||| ||||| || | || |||||||||||||||| |
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| T |
37695503 |
gataaattggaggtaagagacaagacaaaaactgatatttttgtccctcatcaaaccacaacacaactttt |
37695573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 409
Target Start/End: Complemental strand, 41934740 - 41934632
Alignment:
| Q |
301 |
tgtatagtatatgaattgtaaaactgatttaaggacaagataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaac |
400 |
Q |
| |
|
|||||||| | ||| |||||||||||||| | ||| ||||||| |||| | ||| || || ||||||||||||||| ||| |||| ||| ||||||| |
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| T |
41934740 |
tgtatagtgtgtgatttgtaaaactgattaagggatgagataaactggatgcaaaagacaagacaaaaactgaaattcttgtacttcactaaaccacaac |
41934641 |
T |
|
| Q |
401 |
acaactttt |
409 |
Q |
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||||||||| |
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| T |
41934640 |
acaactttt |
41934632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 407
Target Start/End: Complemental strand, 39792956 - 39792869
Alignment:
| Q |
320 |
aaaactgatttaaggacaagataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaactt |
407 |
Q |
| |
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||||||| |||| |||||||||||||||||| ||| |||| ||||||| ||||||| |||||||| || |||||||||||||| |
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| T |
39792956 |
aaaactgttttagggacaagataaattggagacaaaagatatgacaaaaattgaaattcttgtccttcaccaaaccacaacacaactt |
39792869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0650 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 1595 - 1688
Alignment:
| Q |
316 |
ttgtaaaactgatttaaggacaagataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaactttt |
409 |
Q |
| |
|
||||||||||| || ||||| | || ||| |||||| || ||| || |||||||||||||||| ||||| || || |||||||||||||||| |
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|
| T |
1595 |
ttgtaaaactgtttcaaggataggacaaactggaggcaagggacaagacaaaaactgaaatttttgtccctcaccaaaccacaacacaactttt |
1688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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