View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20792_low_2 (Length: 428)

Name: NF20792_low_2
Description: NF20792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20792_low_2
NF20792_low_2
[»] chr5 (6 HSPs)
chr5 (232-419)||(28793523-28793714)
chr5 (26-192)||(28793137-28793302)
chr5 (25-216)||(26661439-26661630)
chr5 (25-216)||(26933032-26933223)
chr5 (21-107)||(5615440-5615525)
chr5 (86-200)||(13907597-13907711)
[»] chr6 (5 HSPs)
chr6 (25-200)||(34433514-34433689)
chr6 (19-211)||(16323386-16323578)
chr6 (19-211)||(16335534-16335726)
chr6 (20-216)||(16325592-16325787)
chr6 (20-216)||(16348990-16349185)
[»] chr8 (2 HSPs)
chr8 (25-200)||(28417523-28417698)
chr8 (25-200)||(33213566-33213741)
[»] chr2 (5 HSPs)
chr2 (88-211)||(43864732-43864855)
chr2 (42-213)||(43870368-43870538)
chr2 (25-200)||(40473039-40473214)
chr2 (73-200)||(32076945-32077072)
chr2 (102-200)||(29694466-29694564)
[»] chr1 (4 HSPs)
chr1 (25-222)||(42474414-42474603)
chr1 (25-200)||(44312814-44312989)
chr1 (124-200)||(12138444-12138520)
chr1 (33-200)||(13165062-13165232)
[»] scaffold0146 (1 HSPs)
scaffold0146 (70-199)||(24195-24324)
[»] chr4 (2 HSPs)
chr4 (49-213)||(26949216-26949379)
chr4 (86-215)||(25141442-25141571)
[»] chr7 (2 HSPs)
chr7 (25-200)||(29738755-29738930)
chr7 (72-200)||(41210122-41210250)
[»] chr3 (1 HSPs)
chr3 (21-107)||(21160727-21160812)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 232 - 419
Target Start/End: Original strand, 28793523 - 28793714
Alignment:
Q  232 actattattatttcgtttatctgccttaaaaactaacgttgaggagatac---aaaatctccatttccaaatataatattctctgcacgaatgttttatt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  28793523 actattattatttcgtttatctgccttaaaaactaacgttgaggagatactacaaaatctccatttccaaatataatattctctgcacgaatgttttatt 28793622  T
Q  329 attaaaacccaaccaaacatcatattcttttg-ttttcccatgtgtgccttttggatccatttgatcagcctccttaggctttgagtattat 419  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  28793623 attaaaacccaaccaaacatcatattcttttgtttttcacatgtgtgccatttggatccatttgatcagcctcattaggctttgagtgttat 28793714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 28793137 - 28793302
Alignment:
Q  26 atcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagact 125  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||  |||||||||||    
T  28793137 atcttttaaagctcttttttcctctttctttacaaactt-agggtggagttcactagacgacaaacaaattcagttgctcatgcgcttgcatgagagact 28793235  T
Q  126 acatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaata 192  Q
    |||||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28793236 acatttctaactagtcccgttattaattttcgtatcccatcttgtattgaatctattattataaata 28793302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 26661439 - 26661630
Alignment:
Q  25 catcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagac 124  Q
    |||||| |||||||||| ||||||| |||| || |||||||| ||| ||||| |||||||||||| ||||| |||| |||||| || |  || |||||||    
T  26661439 catcttgtaaagctcttatttcctccttctctataaacttcagggtagagtttactagacaacaaacaaatacagtcgctcatccgtttgcaggagagac 26661538  T
Q  125 tacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaacgaacatgtttccttc 216  Q
    ||||||||||  || |||||| ||| |||  | |||| |||||| ||||||| |||||||||| ||  |||||||| |||||||||| ||||    
T  26661539 tacatttctaactagtcccgtcatttattaacatatctcatcttttattgaaactattattattaaagaaatgcaatgaacatgttttcttc 26661630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 26933032 - 26933223
Alignment:
Q  25 catcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagac 124  Q
    |||||| |||||||||| ||||||| |||| || |||||||| ||| ||||| |||||||||||| ||||| |||| |||||| || |  || |||||||    
T  26933032 catcttgtaaagctcttatttcctccttctctataaacttcagggtagagtttactagacaacaaacaaatacagtcgctcatccgtttgcaggagagac 26933131  T
Q  125 tacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaacgaacatgtttccttc 216  Q
    ||||||||||  || |||||| ||| |||  | |||| |||||| ||||||| |||||||||| ||  |||||||| |||||||||| ||||    
T  26933132 tacatttctaactagtcccgtcatttattaacatatctcatcttttattgaaactattattattaaagaaatgcaatgaacatgttttcttc 26933223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 5615525 - 5615440
Alignment:
Q  21 atcacatcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcat 107  Q
    ||||||||||  |||||||| |||||||| |||||| ||||||||| ||| ||||||||||| | |||| ||||| |||||||||||    
T  5615525 atcacatcttgcaaagctctattttcctccttcttt-caaacttcagggtagagttcactaggcgacaaacaaatgcagttgctcat 5615440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 13907711 - 13907597
Alignment:
Q  86 acaagcaaattcagttgctcatgcgctcacatgagagactacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattatt 185  Q
    |||||||||| |||  ||||||||| |  || ||||| |||||||||||| || |||||| ||| ||| || |||||| |||| ||||||| | ||||||    
T  13907711 acaagcaaatgcagcagctcatgcgtttgcaagagaggctacatttctagctagtcccgtcatttattatcatatcccttcttgtattgaaacaattatt 13907612  T
Q  186 ataaataaaatgcaa 200  Q
    |||||| ||||||||    
T  13907611 ataaatgaaatgcaa 13907597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 34433514 - 34433689
Alignment:
Q  25 catcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagac 124  Q
    |||||| ||||||||| |||||| ||||||| |  |||| || ||| ||||||||||  |||||||||||| |||  ||||||||||| ||| ||||| |    
T  34433514 catcttataaagctctcttttccgctttcttcatcaactccagggtagagttcactatgcaacaagcaaatgcagcagctcatgcgcttacaagagaggc 34433613  T
Q  125 tacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaa 200  Q
    ||||||||||  || |||||| ||| ||| || |||||| |||| ||||||| | |||||||||||| ||||||||    
T  34433614 tacatttctaactagtcccgtcatttattatcatatcccttcttgtattgaaacaattattataaatgaaatgcaa 34433689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 16323386 - 16323578
Alignment:
Q  19 ttatcacatcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatg 118  Q
    ||||| ||||||  |||||||| |||||| ||||||||||||| | || | | ||||||||||| | |||||||||| |||  |||||||  ||   | |    
T  16323386 ttatcgcatcttgcaaagctctcttttccgctttctttacaaattccaggatagagttcactagccgacaagcaaatgcagccgctcatgttctagtagg 16323485  T
Q  119 agagactacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaacgaacatgttt 211  Q
    ||||  || |||||||| || |||| ||||| ||  || ||||||||||| |||| |   ||||||||| ||| |||||||| || |||||||    
T  16323486 agaggatatatttctagctagtcccattatttatcatcatatcccatcttgtattaacaatattattattaatgaaatgcaatgagcatgttt 16323578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 16335534 - 16335726
Alignment:
Q  19 ttatcacatcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatg 118  Q
    ||||| ||||||  |||||||| |||||| ||||||||||||| | || | | ||||||||||| | |||||||||| |||  |||||||  ||   | |    
T  16335534 ttatcgcatcttgcaaagctctcttttccgctttctttacaaattccaggatagagttcactagccgacaagcaaatgcagccgctcatgttctagtagg 16335633  T
Q  119 agagactacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaacgaacatgttt 211  Q
    ||||  || |||||||| || |||| ||||| ||  || ||||||||||| |||| |   ||||||||| ||| |||||||| || |||||||    
T  16335634 agaggatatatttctagctagtcccattatttatcatcatatcccatcttgtattaacaatattattattaatgaaatgcaatgagcatgttt 16335726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 16325592 - 16325787
Alignment:
Q  20 tatcacatcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatga 119  Q
    |||| ||||||  |||||||| |||||| ||||||| ||||||  || | | ||||||||||| | |||||||||| ||   |||||||  ||  || ||    
T  16325592 tatcgcatcttgcaaagctctcttttccgctttctt-acaaacaccaggatagagttcactaggcgacaagcaaatgcaaccgctcatgttctagcagga 16325690  T
Q  120 gagactacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaacgaacatgtttccttc 216  Q
    ||| ||| |||||||| |||| || | ||| ||| || ||| ||||||| |||| |   ||||||||| ||| |||||||| || ||||||||||||    
T  16325691 gaggctatatttctagttaattccatgatttattatcatataccatcttgtattaacgatattattattaatgaaatgcaatgagcatgtttccttc 16325787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 16348990 - 16349185
Alignment:
Q  20 tatcacatcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatga 119  Q
    |||| ||||||  |||||||| |||||| ||||||| ||||||  || | | ||||||||||| | |||||||||| ||   |||||||  ||  || ||    
T  16348990 tatcgcatcttgcaaagctctcttttccgctttctt-acaaacaccaggatagagttcactaggcgacaagcaaatgcaaccgctcatgttctagcagga 16349088  T
Q  120 gagactacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaacgaacatgtttccttc 216  Q
    ||| ||| |||||||| |||| || | ||| ||| || ||| ||||||| |||| |   ||||||||| ||| |||||||| || ||||||||||||    
T  16349089 gaggctatatttctagttaattccatgatttattatcatataccatcttgtattaacgatattattattaatgaaatgcaatgagcatgtttccttc 16349185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 28417523 - 28417698
Alignment:
Q  25 catcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagac 124  Q
    |||||| ||||||||| |||||| | ||||| |  ||||||| |   ||||||||||| | |||||||||| |||  |||||||||||  || ||||| |    
T  28417523 catcttgtaaagctctcttttccgccttcttcatcaacttcaggacagagttcactaggcgacaagcaaatgcagcagctcatgcgcttgcaagagaggc 28417622  T
Q  125 tacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaa 200  Q
    ||||||||||| || |||||| ||| ||| || |||||| |||||||||||| | |||||||||||| ||||||||    
T  28417623 tacatttctagctagtcccgtcatttattatcatatcccttcttatattgaaacaattattataaatgaaatgcaa 28417698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 33213566 - 33213741
Alignment:
Q  25 catcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagac 124  Q
    |||||| ||||||||| |||||| | ||||| |  |||| |||||| ||||||||||| | |||||||||| |||  ||||||  |||  || |||||||    
T  33213566 catcttgtaaagctctcttttccgccttcttcatcaactccatggtagagttcactaggcgacaagcaaatgcagcagctcatttgcttgcaagagagac 33213665  T
Q  125 tacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaa 200  Q
    ||||||||||| || |||||| ||| ||| || |||||| |||| ||||||| | |||||||||||| ||||||||    
T  33213666 tacatttctagctagtcccgtcatttattatcatatcccttcttgtattgaaacaattattataaatgaaatgcaa 33213741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 43864732 - 43864855
Alignment:
Q  88 aagcaaattcagttgctcatgcgctcacatgagagactacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattat 187  Q
    |||||||| |||  |||||||||||  ||  |||||| |||||||||  ||||||||||| | ||||||||||| |||||| ||||||||||||||||||    
T  43864732 aagcaaatgcagccgctcatgcgcttgcagaagagacaacatttctaactaatcccgttacttattttcgtatctcatcttgtattgaatctattattat 43864831  T
Q  188 aaataaaatgcaacgaacatgttt 211  Q
    |||| |||||| | ||||||||||    
T  43864832 aaatgaaatgcgatgaacatgttt 43864855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 43870368 - 43870538
Alignment:
Q  42 ttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagactacatttctaggtaatc 141  Q
    |||||| |||||||||||||||  | |||||||||  | |||  |||||||||| |||  |||||||||||   | ||||| | ||||| |||| || ||    
T  43870368 ttttccgctttctttacaaactctagggtggagttttcgagaggacaagcaaatgcagccgctcatgcgcttgtaggagaggcaacatt-ctagctagtc 43870466  T
Q  142 ccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaacgaacatgtttcc 213  Q
     ||||| | ||||||||||| |||||| |||||||||||||||||||||| |||||||| || |||||||||    
T  43870467 tcgttactcattttcgtatctcatcttgtattgaatctattattataaatgaaatgcaatgagcatgtttcc 43870538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 40473039 - 40473214
Alignment:
Q  25 catcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagac 124  Q
    |||||| ||||||||| |||||| ||||||| |  ||||  | ||| |||||||||||   |||||||||| |||  |||||||||||  || ||||| |    
T  40473039 catcttgtaaagctctcttttccgctttcttcatcaactctagggtagagttcactaggtgacaagcaaatgcagcagctcatgcgcttgcaagagaggc 40473138  T
Q  125 tacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaa 200  Q
    ||||||||||| || |||||| ||| ||| || |||| | |||| ||||||| | |||||||||||| ||||||||    
T  40473139 tacatttctagctagtcccgtcatttattatcatatcacttcttgtattgaaacaattattataaatgaaatgcaa 40473214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 32077072 - 32076945
Alignment:
Q  73 agttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagactacatttctaggtaatcccgttattaattttcgtatcccatcttatat 172  Q
    |||||||||| | |||||||||| |||  |||||||||||  || ||||| |||||||||||| || ||| || ||| ||| || |||||| |||| |||    
T  32077072 agttcactaggcgacaagcaaatgcagcagctcatgcgcttgcaagagagcctacatttctagctagtccggtcatttattatcatatcccttcttgtat 32076973  T
Q  173 tgaatctattattataaataaaatgcaa 200  Q
    |||| | |||||| ||||| ||||||||    
T  32076972 tgaaacaattattgtaaatgaaatgcaa 32076945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 29694564 - 29694466
Alignment:
Q  102 gctcatgcgctcacatgagagactacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaa 200  Q
    |||||||||||  || ||||| |||||||||||| || |||||| ||| ||| || |||||| ||||  |||||| | |||||||||||| ||||||||    
T  29694564 gctcatgcgcttgcaagagaggctacatttctagctagtcccgtcatttattatcatatcccttcttgcattgaaacaattattataaatgaaatgcaa 29694466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 42474603 - 42474414
Alignment:
Q  25 catcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagac 124  Q
    |||||| ||||||||| |||| | ||||||||||||||| || ||| |||||||         ||||||||  || ||||||||||||  || |||||||    
T  42474603 catcttgtaaagctctgtttttcgctttctttacaaactccagggtagagttcat--------aagcaaatgtagctgctcatgcgcttgcaggagagac 42474512  T
Q  125 tacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaacgaacatgtttccttcgacaac 222  Q
    ||||||||||| || || | ||||| ||| || ||||||||||| |||||||  ||||||||||||| |||||||| || ||||||||| || |||||    
T  42474511 tacatttctagatagtctcattatttattatcatatcccatcttgtattgaaaatattattataaatgaaatgcaatgagcatgtttccctcaacaac 42474414  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 44312989 - 44312814
Alignment:
Q  25 catcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagac 124  Q
    |||||| ||||||||| |||||| | ||||| |  |||| || |||   ||||||||| | |||||||||| |||  |||||||||||  || ||||  |    
T  44312989 catcttgtaaagctctcttttccgccttcttcatcaactccagggtaaggttcactaggcgacaagcaaatgcagcagctcatgcgcttgcaagagaagc 44312890  T
Q  125 tacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaa 200  Q
    ||||||||||| || |||||| ||| ||| || |||||| |||| ||||||| | |||||||||||| ||||||||    
T  44312889 tacatttctagctagtcccgtcatttattatcatatcccttcttgtattgaaacaattattataaatgaaatgcaa 44312814  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 12138520 - 12138444
Alignment:
Q  124 ctacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaa 200  Q
    |||||||||||| || || ||||| | |||| | |||||| | ||||||||||||||||||||| ||||||||||||    
T  12138520 ctacatttctagctagtctcgttacttatttccatatccctttttatattgaatctattattattaataaaatgcaa 12138444  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 13165232 - 13165062
Alignment:
Q  33 aaagctcttttttcctctttctttacaaactt---catggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagactacat 129  Q
    |||||||| |||||||| |||||| ||||||    || ||| ||||||||||| | ||||| |||| |||||||||||| | |  ||  |||| ||||||    
T  13165232 aaagctctattttcctccttctttgcaaactcatccagggtagagttcactaggcgacaagaaaatgcagttgctcatgagtttgcaaaagaggctacat 13165133  T
Q  130 ttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaa 200  Q
    || ||| || |||||| ||| ||| ||||||| || ||| || | || |||||||||||||| ||||||||    
T  13165132 ttatagttagtcccgtcatttattatcgtatctcaccttgtactcaaactattattataaatgaaatgcaa 13165062  T

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Target: scaffold0146 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 24195 - 24324
Alignment:
Q  70 tggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagactacatttctaggtaatcccgttattaattttcgtatcccatctta 169  Q
    |||||||  |||| |||||||||||| |||   ||||||||||  || ||||| | |||||||||  || ||||| || | ||||| ||||||||||||     
T  24195 tggagttttctaggcaacaagcaaatgcagcaactcatgcgcttgcaggagaggcaacatttctacctagtcccgctacttattttagtatcccatcttg 24294  T
Q  170 tattgaatctattattataaataaaatgca 199  Q
    ||||||||||||||||||||||||||||||    
T  24295 tattgaatctattattataaataaaatgca 24324  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 26949216 - 26949379
Alignment:
Q  49 ctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagactacatttctaggtaatcccgttat 148  Q
    |||||||||||||||  | |||||||||  |||  | ||||||||||   |  |||||||||||  || ||||| | |||||||||| || ||| ||||     
T  26949216 ctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagtcctgttac 26949315  T
Q  149 taattttcgtatcccatcttatattgaatctattattataaataaaatgcaacgaacatgtttcc 213  Q
    | |||||||| |||| |||| ||||||| |||||||||||||| ||||||||||| |||||||||    
T  26949316 ttattttcgt-tcccttcttgtattgaacctattattataaatgaaatgcaacgagcatgtttcc 26949379  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 25141442 - 25141571
Alignment:
Q  86 acaagcaaattcagttgctcatgcgctcacatgagagactacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattatt 185  Q
    |||||||||| ||| ||||||||| ||  ||  |||| | |||||||||| || |||| ||||| ||| || ||||||| |||||||| || | |||||     
T  25141442 acaagcaaatgcagctgctcatgcccttgcagaagaggcgacatttctagctagtcccattatttattatcatatcccaacttatatttaaacaattatg 25141541  T
Q  186 ataaataaaatgcaacgaacatgtttcctt 215  Q
     | ||| |||||||| ||||||||||||||    
T  25141542 tttaatgaaatgcaatgaacatgtttcctt 25141571  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 29738755 - 29738930
Alignment:
Q  25 catcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagac 124  Q
    |||||| ||||||||| |||||| ||||||| |  ||||  | ||| ||||||||||| | || |||||||  ||| ||| |||||||   | ||||| |    
T  29738755 catcttgtaaagctctcttttccactttcttcatcaactctagggtagagttcactaggcgactagcaaatgtagtagcttatgcgcttgtaagagaggc 29738854  T
Q  125 tacatttctaggtaatcccgttattaattttcgtatcccatcttatattgaatctattattataaataaaatgcaa 200  Q
    ||||||||||| || |||||| ||| ||| || |||||| |||| ||||| | | |||||||||||| ||||||||    
T  29738855 tacatttctagctagtcccgtcatttattatcatatcccttcttgtattgcaacaattattataaatgaaatgcaa 29738930  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 41210122 - 41210250
Alignment:
Q  72 gagttcactagacaacaagcaaattcagttgctcatgcgctcacatgagagactacatttctaggtaatcccgttattaattttcgtatcccatcttata 171  Q
    ||||||||||| | |||||||||| |||  |||||||||||  || ||||  ||| |||||||| || |||||| ||| ||| ||  ||||| |||| ||    
T  41210122 gagttcactaggcgacaagcaaatgcagcagctcatgcgctttcaagagatgctatatttctagttagtcccgtcatttattatcaaatcccttcttgta 41210221  T
Q  172 ttgaatctattattataaataaaatgcaa 200  Q
    ||||| | |||||||||||| ||||||||    
T  41210222 ttgaaacaattattataaatgaaatgcaa 41210250  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 21160812 - 21160727
Alignment:
Q  21 atcacatcttttaaagctcttttttcctctttctttacaaacttcatggtggagttcactagacaacaagcaaattcagttgctcat 107  Q
    ||||||||||  |||||||| |||||||| |||||| ||||||||| ||| ||||||||||| | |||| ||||| |||||||||||    
T  21160812 atcacatcttgcaaagctctattttcctccttcttt-caaacttcagggtagagttcactaggcgacaaacaaatgcagttgctcat 21160727  T

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