View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20792_low_4 (Length: 312)
Name: NF20792_low_4
Description: NF20792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20792_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 43947860 - 43948140
Alignment:
| Q |
19 |
gccatatgatttatgctctttaacatcaaatacttatcatgtgctcatgagaacgaactacttttatcacaaaattattgattttggaatgcatcttgtc |
118 |
Q |
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| T |
43947860 |
gccatatgatttatgctctttaacatcaaatacttatcatgtgctcatgagaacgaactacttttatcacaaaattattgattgtggaatgcatcttgtc |
43947959 |
T |
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| Q |
119 |
aattttttaatatttcatgttatgttaatatttgtttgcttcgttttttatacctctttgtaaacttttgatttgaatgatttcagagtgataattgata |
218 |
Q |
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| T |
43947960 |
aattttttaatatttcatgttatgttaatatttgtttgcttcgttttttatacctctttgtaaacttttgatttgaatgatttcagagtgataattga-- |
43948057 |
T |
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| Q |
219 |
gtaatgtttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaacttagcagtttcttcat |
302 |
Q |
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| T |
43948058 |
-taatgtttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaacttagcagtttcttcat |
43948140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 36612178 - 36612073
Alignment:
| Q |
189 |
atttgaatgatttcagagtgataattgatagta--atgtttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaac |
286 |
Q |
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| T |
36612178 |
atttgaatgatttcacggtgaaaattgataattttatgtttttggaatttaggatgatagatcatcaaatgaagataaggtggagaattgccaacctaac |
36612079 |
T |
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| Q |
287 |
ttagca |
292 |
Q |
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||||| |
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| T |
36612078 |
gtagca |
36612073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 36664064 - 36664012
Alignment:
| Q |
234 |
tttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaac |
286 |
Q |
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| T |
36664064 |
tttaggatgataaatcatcaaatgaagatgaggtggagaagcgccaacctaac |
36664012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 36632031 - 36632092
Alignment:
| Q |
225 |
tttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaac |
286 |
Q |
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| T |
36632031 |
ttttttgcctttagggtgataaatcatcaaatgaagataaggtggagaagcaccaacctaac |
36632092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 29678488 - 29678548
Alignment:
| Q |
41 |
acatcaaatacttatcatgtgctcatgagaacgaactacttttatcacaaaattattgatt |
101 |
Q |
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| T |
29678488 |
acatcaaatattgatcatatgctcatgggaaagaactacttttattgcaaaatgattgatt |
29678548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 19656769 - 19656673
Alignment:
| Q |
192 |
tgaatgatttcagagtgataattgata--gtaatgtttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaac |
286 |
Q |
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|||||||||||| ||||| |||||||| || ||||||||| ||||||||||| |||||||||||||||||| || |||||||||||||| ||||| |
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| T |
19656769 |
tgaatgatttcacagtgacaattgataatgttatgtttttgttatttaggatgataaatcatcaaatgaagataaggtggagaagtgccaaactaac |
19656673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 19673705 - 19673609
Alignment:
| Q |
192 |
tgaatgatttcagagtgataattgata--gtaatgtttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaac |
286 |
Q |
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|||||||||||| |||| |||||||| || ||||||||| ||||||||||| ||||| || ||||||||| || |||||||||||||| ||||| |
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| T |
19673705 |
tgaatgatttcacggtgacaattgataatgttatgtttttgttatttaggatgataaatcgtcgaatgaagataaggtggagaagtgccaaactaac |
19673609 |
T |
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