View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20792_low_7 (Length: 250)
Name: NF20792_low_7
Description: NF20792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20792_low_7 |
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| [»] scaffold0727 (2 HSPs) |
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Alignment Details
Target: scaffold0727 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 4120 - 3966
Alignment:
| Q |
12 |
atgaactagagcaagaaatagagaaataaaaaatgtcatagcatacacaaacttgaaaattgcagtcatattatttgatcagtttataatttaaaacatt |
111 |
Q |
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| T |
4120 |
atgaactagagcaagaaatagagaaataaaaaatgtcatagcatacacaaacttgaaaattgcagtcatattatttgatcagtttataatttaaaacatt |
4021 |
T |
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| Q |
112 |
tgatggtatgcttacttcatttaaatagtttttaatactttggaattgcaataaa |
166 |
Q |
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| T |
4020 |
tgatggtatgcttacttcatttaaatagtttttaatactttggaattgcaataaa |
3966 |
T |
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Target: scaffold0727; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 3941 - 3854
Alignment:
| Q |
163 |
taaaatgtatccaaagtacaatgatatgttatgtttgtccctttagctcaaataattagttacttgacctttgaatggatctaactat |
250 |
Q |
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| T |
3941 |
taaaatgtatccaaagtacaatggtatgtcatgtttgtccctttagctcaaataattagttacttgacctttgaatggatctaactat |
3854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 23551985 - 23551831
Alignment:
| Q |
12 |
atgaactagagcaagaaatagagaaataaaaaatgtcatagcatacacaaacttgaaaattgcagtcatattatttgatcagtttataatttaaaacatt |
111 |
Q |
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| T |
23551985 |
atgaactagagcaagaaatagagaaataaaaaatgtcatagcatacacaaacttgaaaattgcagtcatattatttgatcagtttataatttaaaacatt |
23551886 |
T |
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| Q |
112 |
tgatggtatgcttacttcatttaaatagtttttaatactttggaattgcaataaa |
166 |
Q |
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| T |
23551885 |
tgatggtatgcttacttcatttaaatagtttttaatactttggaattgcaataaa |
23551831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 23551806 - 23551719
Alignment:
| Q |
163 |
taaaatgtatccaaagtacaatgatatgttatgtttgtccctttagctcaaataattagttacttgacctttgaatggatctaactat |
250 |
Q |
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| T |
23551806 |
taaaatgtatccaaagtacaatggtatgtcatgtttgtccctttagctcaaataattagttacttgacctttgaatggatctaactat |
23551719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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