View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20793_high_1 (Length: 349)
Name: NF20793_high_1
Description: NF20793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20793_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 148 - 332
Target Start/End: Original strand, 16030937 - 16031122
Alignment:
| Q |
148 |
gtatgtgcaccaataatgagaatcaacataaacaannnnnnnaactgaaaatgaaagtacaaaattgtttcaactttcatgcccc-ctcttgtattcttg |
246 |
Q |
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| T |
16030937 |
gtatgtgcaccaataatgagaatcaacataaacaatttttttaactgaaaatgaaagtacaaaattgtttcaactttcatgcccccctcttgtattcttg |
16031036 |
T |
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| Q |
247 |
tctttttacattactttcattagttccaactttcatctctattgagcatgctgacatatattctagggataaatttggagtgagat |
332 |
Q |
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| T |
16031037 |
tctttttacattgctttcattagttccaactttcatctctattgagcatgctgacatatattctagggataaatttggggtgagat |
16031122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 16030791 - 16030892
Alignment:
| Q |
1 |
atattgtaacctcccttctatctcttccttattattaattgttaaagatttatttagttttttcttgtttgcttacaaaattaattgggtatggagatga |
100 |
Q |
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| T |
16030791 |
atattgtaacctcccttctatctcatccttattattaattgttaaagatttatttagttttttcttgtttgcttacaaaattaattgggtatggagatga |
16030890 |
T |
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| Q |
101 |
cc |
102 |
Q |
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|| |
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| T |
16030891 |
cc |
16030892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 148 - 332
Target Start/End: Original strand, 18623141 - 18623326
Alignment:
| Q |
148 |
gtatgtgcaccaataatgagaatcaacataaacaannnnnnnaactgaaaatgaaagtacaaaattgtttcaactttcatgc-cccctcttgtattcttg |
246 |
Q |
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| T |
18623141 |
gtatgtgcaccaataatgagaatcaacataaacaatttttttaattgaaaatgagagtacaaaattgttccaactttcatgcacccctcttgtattcttg |
18623240 |
T |
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| Q |
247 |
tctttttacattactttcattagttccaactttcatctctattgagcatgctgacatatattctagggataaatttggagtgagat |
332 |
Q |
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| T |
18623241 |
gcgttttacattgctttcattagttccaactctcatctctattgagcatgctgacatatattctagggacaaattttgagtgagat |
18623326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 18622993 - 18623097
Alignment:
| Q |
1 |
atattgtaacctcccttctatctcttccttattattaattgttaaagatttatttagttttttcttgtttgcttacaaaattaattgggtatggagatga |
100 |
Q |
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| T |
18622993 |
atattgtaacttcccttctatctcttccttgttattaattgttaaagatttatttagttttttcttgtctgcttacaaaattaattgggtatggagatga |
18623092 |
T |
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| Q |
101 |
ccctg |
105 |
Q |
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||||| |
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| T |
18623093 |
ccctg |
18623097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 38787355 - 38787419
Alignment:
| Q |
248 |
ctttttacattactttcattagttccaactttcatctctattgagcatgctgacatatattctag |
312 |
Q |
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| T |
38787355 |
ctttttactttgccttcatttcttccaactttcatctctattgagcatgcttacatgtattctag |
38787419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 17204364 - 17204298
Alignment:
| Q |
39 |
ttgttaaagatttatttagttttttcttgtttgcttacaaaattaattgggtatggagatgaccctg |
105 |
Q |
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| T |
17204364 |
ttgttaaagatgtatttagcttttttttgtttgcttacaaaattaattgggtatggagatgaccctg |
17204298 |
T |
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