View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20794_high_10 (Length: 425)
Name: NF20794_high_10
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 44342810 - 44342411
Alignment:
| Q |
12 |
aagaagatggattaagattaattaagagatagctttatcatatagcttgtctttcaagtaattttatacagtttagaatttctcttggaaaatggatagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44342810 |
aagaagatggattaagattaattaagagatagctttatcatatagcttgtctttcaagtaattttatacagtttagaatttctcttggaaaatggatagt |
44342711 |
T |
|
| Q |
112 |
taatcaatgtatatgatatcttagccttgactcaatatgctctctccattagataatatatggaaattatatatagcctggtttttggacaaatttgtgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44342710 |
taatcaatgtatatgatatcttagccttgacttaatatgctctctccattagataatatatggaaattatatatagcctggtttttggacaaatttgtgg |
44342611 |
T |
|
| Q |
212 |
tgacaactctatgttgcatagcatataatacccaacaatttgaagccatgccattttttatatttaattattggtttaattgcatctttgttcccctaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44342610 |
tgacaactctatgttgcatagcatataatatccaacaatttgaagccatgccattttttatatttaattattggtttaattgcatctttgttcccctaat |
44342511 |
T |
|
| Q |
312 |
ttattttgaagtttaaacaaacatattcattaaggaaaacagatcattatagatagattcaactagtgttgtaatattctccatccacctttttaaaact |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44342510 |
ttattttgaagtttaaacaaacatattcattaaggagaacagatcattatagatagattcagctagtgttgtaatattctctatccacctttttaaaact |
44342411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University