View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_high_12 (Length: 392)
Name: NF20794_high_12
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 40211518 - 40211162
Alignment:
| Q |
21 |
acaacatatatgccactgaagcaatgtttattttcattttttactatagaaaatctttatattatatagatagaaaataataaagggtgggggtggcaaa |
120 |
Q |
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| T |
40211518 |
acaacatatatgccactgaagcaatgtttattttcattttttactatagaaaatctttatattatatagatagaaaataataaagggtgggggtggcaaa |
40211419 |
T |
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| Q |
121 |
tgatagggaccaaaattactataggcattcagaattgacatgtatgtatgctgctattgccgcccacttagccaattccattgcattttttgttctcatt |
220 |
Q |
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| T |
40211418 |
tgatagtgaccaaaattactataggcattcggaattgacatgtatgtatgctgctattgccgcccacttagccaatttcattgcattttttgttctcatt |
40211319 |
T |
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| Q |
221 |
tttcaaatatataacgtgcataatataatttgtcaaatgaatttcaattttcaaacacaaacacaatcaatgatgctatgatatggctaagaaagaacca |
320 |
Q |
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| T |
40211318 |
tttcaaatatataatgtgcataatataatttgtcaattgaa-ttcaattttcaaacacaaacacaatcaatgatgctatgatatggctaagaaagaacca |
40211220 |
T |
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| Q |
321 |
cgtgttgtacatttgtaggccaattttatgttgaataagaattctatgtttgcttctg |
378 |
Q |
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| T |
40211219 |
cgtgttgtacatttgtaggccaattttatgttgaataagaattctatgtttgcttctg |
40211162 |
T |
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