View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_high_22 (Length: 239)
Name: NF20794_high_22
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 19653290 - 19653073
Alignment:
| Q |
18 |
tacattccgttgcacaaatcactcatttaaccatttaatctcgatgtctttagttattttgactctagaattgctgcttgggtgtaatgtaattgaaccg |
117 |
Q |
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| T |
19653290 |
tacattccgttgcacaaatcactcatttaaccatttaatctcgatgtgtttagatatt--gactctagaattgctgcttgggtgtaatgtaattgaatcg |
19653193 |
T |
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| Q |
118 |
actttttatagtgtgcgcaaaattttctccatggcttctttttctgttatattatcactggtattctttaattcatcgaccaactta-cttctttgaaaa |
216 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | |||| ||||| |
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| T |
19653192 |
acttgttatagtgtgtgcaaaattttctccatggcttctttttctgttatattatcactggtattcttcaatttgtcgaccaacttatcatcttggaaaa |
19653093 |
T |
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| Q |
217 |
atttcacgaatattttcatg |
236 |
Q |
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|||||||||||||||||||| |
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| T |
19653092 |
atttcacgaatattttcatg |
19653073 |
T |
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