View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20794_high_6 (Length: 481)

Name: NF20794_high_6
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20794_high_6
NF20794_high_6
[»] chr5 (4 HSPs)
chr5 (38-192)||(11051887-11052041)
chr5 (408-463)||(11051604-11051658)
chr5 (43-169)||(24874202-24874329)
chr5 (254-313)||(11051758-11051825)
[»] chr4 (2 HSPs)
chr4 (119-192)||(26333756-26333829)
chr4 (127-191)||(11376072-11376136)
[»] chr1 (1 HSPs)
chr1 (119-187)||(28521656-28521724)
[»] chr7 (1 HSPs)
chr7 (38-186)||(9082866-9083014)
[»] chr8 (1 HSPs)
chr8 (119-192)||(45377007-45377080)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 11052041 - 11051887
Alignment:
Q  38 ggagcagagaaatgttatggttaatcacactcttagggaaggaaaacaatgtgcgtannnnnnngacaagtttgatgttttttctgctgttgagtttctt 137  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||        |||||||| ||| || || || |||||||||||||    
T  11052041 ggagcagagaaatgttatggttaatcacactcttaggaaaggaaaacaatgtgcgtatttttttaacaagtttaatgcttcttttgatgttgagtttctt 11051942  T
Q  138 cgacatgagtctcctttggtgaacctcaagaattttctccaaaatgatgcggctg 192  Q
    || ||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  11051941 cggcatgagtctcctcggatgaacctcaagaattttctccaaaatgatgcggctg 11051887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 408 - 463
Target Start/End: Complemental strand, 11051658 - 11051604
Alignment:
Q  408 tatcaaaatgacatttttcttgtccaattcttctatcggttttcttgactatcaaa 463  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  11051658 tatcaaaatgacatttttctt-tccaattcatctatcggttttcttgactatcaaa 11051604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 24874202 - 24874329
Alignment:
Q  43 agagaaatgttatggttaatcacactcttagggaaggaaaacaatgtgcgta-nnnnnnngacaagtttgatgttttttctgctgttgagtttcttcgac 141  Q
    ||||||| ||||||||||||||||| ||||||||||| || ||||||||| |        | |||||||| ||  | || || ||||||||||||| |||    
T  24874202 agagaaacgttatggttaatcacacccttagggaagggaatcaatgtgcggattttttttgtcaagtttggtgcctcttttgatgttgagtttctttgac 24874301  T
Q  142 atgagtctcctttggtgaacctcaagaa 169  Q
    || ||||| || ||||||||||||||||    
T  24874302 ataagtcttctctggtgaacctcaagaa 24874329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 11051825 - 11051758
Alignment:
Q  254 gatattacaaccctcttccctcatatttcaaa--------aaccatcctttcaaatatgccaaattat 313  Q
    ||||||||||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||    
T  11051825 gatattacaaccctcttccctcacatttcaaaacaaacacaaccatcctttcaaatatggcaaattat 11051758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 26333829 - 26333756
Alignment:
Q  119 ttctgctgttgagtttcttcgacatgagtctcctttggtgaacctcaagaattttctccaaaatgatgcggctg 192  Q
    ||||| ||||||||||||||| ||||||||||||  | |||||||||||||| ||||||||  |||||||||||    
T  26333829 ttctgatgttgagtttcttcggcatgagtctcctccgttgaacctcaagaatcttctccaaggtgatgcggctg 26333756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 11376136 - 11376072
Alignment:
Q  127 ttgagtttcttcgacatgagtctcctttggtgaacctcaagaattttctccaaaatgatgcggct 191  Q
    ||||||||||| | ||||||||||||  | | |||||||||||| | ||| ||||||||||||||    
T  11376136 ttgagtttctttggcatgagtctcctccgataaacctcaagaatctcctctaaaatgatgcggct 11376072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 28521656 - 28521724
Alignment:
Q  119 ttctgctgttgagtttcttcgacatgagtctcctttggtgaacctcaagaattttctccaaaatgatgc 187  Q
    ||||| ||||||||||||| | || |||||||||  | |||||||||||||||||||||||| ||||||    
T  28521656 ttctgatgttgagtttctttggcacgagtctcctccgatgaacctcaagaattttctccaaagtgatgc 28521724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 186
Target Start/End: Complemental strand, 9083014 - 9082866
Alignment:
Q  38 ggagcagagaaatgttatggttaatcacactcttagggaaggaaaacaatgtgcgtannnnnnngacaagtttgatgttttttctgctgttgagtttctt 137  Q
    ||||||| |||||||||||||||||||||| ||||||||||  || ||||||||  |       |  ||| ||  ||  | ||||| |||||| ||||||    
T  9083014 ggagcagggaaatgttatggttaatcacacccttagggaagagaatcaatgtgcagatttttttgcaaagcttcgtgcctcttctgatgttgaatttctt 9082915  T
Q  138 cgacatgagtctcctttggtgaacctcaagaattttctccaaaatgatg 186  Q
    ||||||||||||||| |  |||||||||| ||| | |||||||||||||    
T  9082914 cgacatgagtctcctctaatgaacctcaaaaatctcctccaaaatgatg 9082866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 45377080 - 45377007
Alignment:
Q  119 ttctgctgttgagtttcttcgacatgagtctcctttggtgaacctcaagaattttctccaaaatgatgcggctg 192  Q
    ||||| |||||||||| ||||  |||||||||||  | |||||||||||||| | ||||||||||||| |||||    
T  45377080 ttctgatgttgagttttttcgttatgagtctcctccgatgaacctcaagaatctcctccaaaatgatgtggctg 45377007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University