View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_1 (Length: 616)
Name: NF20794_low_1
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 122 - 599
Target Start/End: Complemental strand, 7210733 - 7210256
Alignment:
| Q |
122 |
catggtttaatcgattaaaccatggttaaaccagatgacagataaatactaaaaaattattaaaccagtcagcgaactgactggttcagttcgattttta |
221 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7210733 |
catggtttaatcaattaaaccatggttaaaccagatgacagataaatactaaaaaattattaaaccagtcagcgaactgactggttcaattcgattttta |
7210634 |
T |
|
| Q |
222 |
aaacatcggtcatcaatctaacagattttctaaatcatatacatttcagtaatttagacatacagaccttggattgctttggcaaggaaaggatgagata |
321 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7210633 |
aaacatcggtcatcaatctaacagattttctaaatcatatacatttcagtaatttagacatacagaccttggattgctttggcaaggaaaggatgagata |
7210534 |
T |
|
| Q |
322 |
agtcctgaaaaatcaatcaacattgaattgaacaatgactaaaacaggttagctgctttccaaggatacataaaatttcaagagcattgatttcattttc |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7210533 |
agtcctgaaaaatcaatcaacattgaattgaacaatgactaaaacaggttagctgctttccaaggatacataaaattttaagagcattgatttcattttc |
7210434 |
T |
|
| Q |
422 |
tatagtggtgtcgatgtcctatgttatttacatcagcaagttgacgtattgtcagtgtcgtgttaggtgtccgtgttagaatccgtgcttcatagaacag |
521 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7210433 |
tatagtggtgtcgatgtcctatgttatttacatcagcaagttgacgtattgtcagtgtcgtgttaggtgtccgtgttagaatccgtgcttcatagaacag |
7210334 |
T |
|
| Q |
522 |
aatactcaccaaatttacaatagatgagtgtccccaagaacaatagccgtcgttgcatttatcatgaggccaccaatc |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7210333 |
aatactcaccaaatttacaatagatgagtgtccccaagaacaatagccgtcgttgcatttatcatgaggccaccaatc |
7210256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 213 - 425
Target Start/End: Complemental strand, 7196899 - 7196687
Alignment:
| Q |
213 |
cgatttttaaaacatcggtcatcaatctaacagattttctaaatcatatacatttcagtaatttagacatacagaccttggattgctttggcaaggaaag |
312 |
Q |
| |
|
|||||| ||||||||||||||| || |||||| || |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
7196899 |
cgatttataaaacatcggtcataaaactaacaatttgtctaaatcatatacatttaagtaatttagacatacaaaccttggattgctttggcaaggagag |
7196800 |
T |
|
| Q |
313 |
gatgagataagtcctgaaaaatcaatcaacattgaattgaacaatgactaaaacaggttagctgctttccaaggatacataaaatttcaagagcattgat |
412 |
Q |
| |
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|| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||| |
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| T |
7196799 |
gacgagataagtcctgaaaaatcaatccacattcaattgaacaatgactaaaacgggttagctgctttccaaggaaacataaaatttcaaaagtattgat |
7196700 |
T |
|
| Q |
413 |
ttcattttctata |
425 |
Q |
| |
|
|| ||| |||||| |
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|
| T |
7196699 |
tttattctctata |
7196687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 7210589 - 7210733
Alignment:
| Q |
1 |
aatgtatatgatttagaaaatctgttagattgatgaccgatgttttaaaaatcgaactgaaccagtcagttcgctgactggtttaataattttttagtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7210589 |
aatgtatatgatttagaaaatctgttagattgatgaccgatgttttaaaaatcgaattgaaccagtcagttcgctgactggtttaataattttttagtat |
7210688 |
T |
|
| Q |
101 |
ttatctgtcatctggtttaaccatggtttaatcgattaaaccatg |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7210689 |
ttatctgtcatctggtttaaccatggtttaattgattaaaccatg |
7210733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 7204167 - 7204053
Alignment:
| Q |
216 |
tttttaaaacatcggtcatcaatctaacagattttctaaatcatatacatttcagtaatttagacatacagaccttggattgctttggcaaggaaaggat |
315 |
Q |
| |
|
|||| ||||||||| |||| | |||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
7204167 |
ttttaaaaacatcgatcataatactaacaaattatctaaatcatatacatttaagtaatttagacatacaaaccttggattgctttggcaaggagaggat |
7204068 |
T |
|
| Q |
316 |
gagataagtcctgaa |
330 |
Q |
| |
|
||||||||||||||| |
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|
| T |
7204067 |
gagataagtcctgaa |
7204053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 350 - 425
Target Start/End: Complemental strand, 7204056 - 7203980
Alignment:
| Q |
350 |
tgaacaatgactaaaacaggttagct-gctttccaaggatacataaaatttcaagagcattgatttcattttctata |
425 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||| ||||||||||| || |||||||||||||||||||||| |
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| T |
7204056 |
tgaacaatgattaaaacaggttagcttgctttccaaggaaacataaaattttaaaagcattgatttcattttctata |
7203980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 599
Target Start/End: Complemental strand, 7203963 - 7203886
Alignment:
| Q |
522 |
aatactcaccaaatttacaatagatgagtgtccccaagaacaatagccgtcgttgcatttatcatgaggccaccaatc |
599 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||||||||||||| |||| ||||||| ||| ||||||||||||| |
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|
| T |
7203963 |
aatacacaccaaattgacaatagatgaatgtccccaagaacaaacgccgaagttgcataattcaggaggccaccaatc |
7203886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 599
Target Start/End: Complemental strand, 7196670 - 7196596
Alignment:
| Q |
522 |
aatactcaccaaatttacaatagatgagtgtccccaagaacaatagccgtcgttgcatttatcatgaggccaccaatc |
599 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||||| |||| ||||||| ||| ||||||||||||| |
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|
| T |
7196670 |
aatacacaccaaatttacaatagacgaatgtccccaagaacaaacgccgaagttgcat---tcaggaggccaccaatc |
7196596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7196846 - 7196899
Alignment:
| Q |
1 |
aatgtatatgatttagaaaatctgttagattgatgaccgatgttttaaaaatcg |
54 |
Q |
| |
|
||||||||||||||||| || |||||| || ||||||||||||||| |||||| |
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|
| T |
7196846 |
aatgtatatgatttagacaaattgttagttttatgaccgatgttttataaatcg |
7196899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 517
Target Start/End: Complemental strand, 8160419 - 8160373
Alignment:
| Q |
471 |
tgtcagtgtcgtgttaggtgtccgtgttagaatccgtgcttcataga |
517 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||| ||||||| |
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|
| T |
8160419 |
tgtcagtgtcgtgttcggtgtccgtgtcagtatccgtgcatcataga |
8160373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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