View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_11 (Length: 411)
Name: NF20794_low_11
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 34617945 - 34617645
Alignment:
| Q |
19 |
tttaatcaaaagtgctatatagcaggagaagaatggcgacaagccaaaatagtggaaatcgtgctatggaaagcaaaacatgggggagagagaattcaat |
118 |
Q |
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| T |
34617945 |
tttaatcataagtgctatatagaaggagaagaatggcgacaagccaaaatagtggaaatcatgctatggaaagcaaaacatgggggagagagaattcaat |
34617846 |
T |
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| Q |
119 |
tagataatggaaagataaacatttaagggtggtaattgatttgtcaattctcatgagttaacatg-gtaatattacacgtgttagacaaacnnnnnnnca |
217 |
Q |
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| T |
34617845 |
tagttaatggaaagataaacatttaaaggttgtaattgatttgtcaattctcatgagttaacatgcgtaatattacacgtgttagacaaactttttttca |
34617746 |
T |
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| Q |
218 |
aaatatttggacaaatatctatagcctgagttataa-tagacgcatgtgtaannnnnnnnatttggattacaatgttattgatacgaagtttacactacc |
316 |
Q |
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| T |
34617745 |
aaatatttgaacaaatatctatatcctgagttataattagatgcatgtgtaattttttttatttggattacaatgttattgatacgaagtttacactacc |
34617646 |
T |
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| Q |
317 |
g |
317 |
Q |
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| T |
34617645 |
g |
34617645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 34617605 - 34617549
Alignment:
| Q |
317 |
gactaatcttcgttggagaacctatgagacacacaagtaagttctccactctcagcc |
373 |
Q |
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| T |
34617605 |
gactaatcttcgttggaacacctatgagacacacaagtaagttctccactctcagcc |
34617549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 19591149 - 19591233
Alignment:
| Q |
85 |
tggaaagcaaaacatgggggagagagaattcaattagataatggaaagataaacatttaagggtggtaattgatttgtcaattctc |
170 |
Q |
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| T |
19591149 |
tggaaagcaaaacatgggg-agagagaatccaattagttaatgcatagataaagatcctagggtggtaattgattcgtcaaatctc |
19591233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 50470330 - 50470405
Alignment:
| Q |
64 |
aaaatagtggaaatcgtgctatggaaagcaaaacatgggggagagagaattcaattagataatggaaagataaacat |
140 |
Q |
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| T |
50470330 |
aaaatagttgaaatcatgggatggaaaggaaaacatgggg-agagagaattcaattagttaacggaaatataaacat |
50470405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 26751820 - 26751722
Alignment:
| Q |
65 |
aaatagtggaaatcgtgctatggaaagcaaaacatgggggagagagaattcaattag-ataatggaaagataaacatttaagggtggtaattgatttgtc |
163 |
Q |
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|||||||||||||| ||| ||||||| ||||||| || |||||||||||||||||| ||||| ||| |||||||| |||||||||||| ||||||| |
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| T |
26751820 |
aaatagtggaaatcatgcaatggaaacgaaaacat-ggagagagagaattcaattagtttaatgtaaatataaacatccaagggtggtaatgaatttgtc |
26751722 |
T |
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