View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_13 (Length: 314)
Name: NF20794_low_13
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 41756529 - 41756817
Alignment:
| Q |
8 |
tgagatgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttccttttagtgtggcaaagatggtccaatttgtctatgtacgc |
107 |
Q |
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| T |
41756529 |
tgagatgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttccttttagtgtggcaaagatggtccaatttgtctatgtacgc |
41756628 |
T |
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| Q |
108 |
gattctcatgattttagtcccataaggaaaaccatcacagattatatcaatgtggtttccgaaaaatatcccttttggaaccgaagccttggagctgatc |
207 |
Q |
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| T |
41756629 |
gattctcatgattttagtcccataaggaaaaccatcacagattatatcaatgtggtttccgaaaaatatcccttttggaaccgaagccttggagctgatc |
41756728 |
T |
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| Q |
208 |
atttcatgctttcttgccatgattgggtatgtacatcactatctcttaaaaatcttagtccatgcattctctatttgagaggaacaatt |
296 |
Q |
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| T |
41756729 |
atttcatgctttcttgccatgattgggtatgtacatcactatctcttaaaaatcttagtccatgcattctctatttgagaggaacaatt |
41756817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 41764492 - 41764699
Alignment:
| Q |
29 |
aacaagagaccccgagaaggcacatgtatttttccttccttttagtgtggcaaagatggtccaatttgtctatgtacgcgattctcatgattttagtccc |
128 |
Q |
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| T |
41764492 |
aacaaaagaccctgagaaggcacatgtatttttcctttcttatagtgtagcaatgatggtccattatgtctatgtacgagactctcgtgcttatgacctc |
41764591 |
T |
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| Q |
129 |
ataaggaaaaccatcacagattatatcaatgtggtttccgaaaaatatcccttttggaaccgaagccttggagctgatcatttcatgctttcttgccatg |
228 |
Q |
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| T |
41764592 |
ttaaggataaccgtcaaagactacatcaatgtcctttccgaaaaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatg |
41764691 |
T |
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| Q |
229 |
attgggta |
236 |
Q |
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|||||||| |
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| T |
41764692 |
attgggta |
41764699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 26974029 - 26973807
Alignment:
| Q |
13 |
tgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttccttttagtgtggcaaagatggtccaatttgtctatgtacgcgattc |
112 |
Q |
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||||||| | |||| |||| ||||| || |||| ||||| || | ||||||||| || ||||||| || | |||||| ||| || ||| || | || || |
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| T |
26974029 |
tgaatgaccaatttagaactagagatcctcagaaagcacacgtctatttccttccgttcagtgtggtaatgttggtccgattcgtttatttaagggactc |
26973930 |
T |
|
| Q |
113 |
tcatgattttagtcccataaggaaaaccatcacagattatatcaatgtggtttccgaaaaatatcccttttggaaccgaagccttggagctgatcatttc |
212 |
Q |
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| T |
26973929 |
tcgtgactttggacctataagaaaaactgtcacggattatatcaatgtcattgctggaaaatatccatattggaatagaagccttggagctgatcatttc |
26973830 |
T |
|
| Q |
213 |
atgctttcttgccatgattgggt |
235 |
Q |
| |
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||||| |||||||||| ||||| |
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| T |
26973829 |
atgctagcttgccatgactgggt |
26973807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 36806120 - 36806159
Alignment:
| Q |
197 |
tggagctgatcatttcatgctttcttgccatgattgggta |
236 |
Q |
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| T |
36806120 |
tggagctgatcatttcatgctttcttgtcatgattgggta |
36806159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 36515106 - 36515067
Alignment:
| Q |
197 |
tggagctgatcatttcatgctttcttgccatgattgggta |
236 |
Q |
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||||||||| ||||||||||||||||| |||||||||||| |
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| T |
36515106 |
tggagctgaccatttcatgctttcttgtcatgattgggta |
36515067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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