View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_15 (Length: 271)
Name: NF20794_low_15
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 19180349 - 19180100
Alignment:
| Q |
6 |
aagaacacgtgcgtaaaacacccgattcagtagtaataggaagataccaaaccaaaactaccaaactactacatttaaaccctctatacatttatgcttt |
105 |
Q |
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| T |
19180349 |
aagaacacgtgcgtaaaacacccgattcagtagtaataggaagataccaaacc-----taccaaactactacatttaaaccctctatggattaatgcttt |
19180255 |
T |
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| Q |
106 |
caataaacatatacaatttaattgtgaccagattctagtgatttgcggccagatttaattgcaagacacgatatcattcaagcatataaaatttcatacc |
205 |
Q |
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| T |
19180254 |
caataaacatatgcaatttaattgtgaccagattctagtgatttgcggccagatttaattgcaagacacgatatcattcaagcatataaaatttcatacc |
19180155 |
T |
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| Q |
206 |
ttaatatcccttaagcatctcaagcatcaccaatcaacttccccttaatcttctt |
260 |
Q |
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| T |
19180154 |
ttaatatcccttaagcatctcaagcatcaccaatcaacttccccttaatcttctt |
19180100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 1480545 - 1480296
Alignment:
| Q |
6 |
aagaacacgtgcgtaaaacacccgattcagtagtaataggaagataccaaaccaaaactaccaaactactacatttaaaccctctatacatttatgcttt |
105 |
Q |
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| T |
1480545 |
aagaacacgtgcgtaaaacacccgattcagtagtaataggaagataccaaacc-----taccaaactactacatttaaaccctctatgtattaatgcttt |
1480451 |
T |
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| Q |
106 |
caataaacatatacaatttaattgtgaccagattctagtgatttgcggccagatttaattgcaagacacgatatcattcaagcatataaaatttcatacc |
205 |
Q |
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| T |
1480450 |
caataaacatatgcaatttaattgtgaccagattctagtgatttgcggccagatttaattgcatgacacgatatcattcaagcatataaaatttcatacc |
1480351 |
T |
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| Q |
206 |
ttaatatcccttaagcatctcaagcatcaccaatcaacttccccttaatcttctt |
260 |
Q |
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| T |
1480350 |
ttaatatcccttaagcatctcaagcatcaccaatcaacttccccttaatcttctt |
1480296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 54 - 260
Target Start/End: Complemental strand, 43060848 - 43060642
Alignment:
| Q |
54 |
aaaccaaaactaccaaactactacatttaaaccctctatacatttatgctttcaataaacatatacaatttaattgtgaccagattctagtgatttgcgg |
153 |
Q |
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|||| |||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||| |||||| |||||||||||||| ||||||||| | |
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| T |
43060848 |
aaactaaaactaccaaactactacatttaaaccctatatgcattaatgccctcaataaacatatgaaatttatttgtgaccagattccagtgatttgtga |
43060749 |
T |
|
| Q |
154 |
ccagatttaattgcaagacacgatatcattcaagcatataaaatttcataccttaatatcccttaagcatctcaagcatcaccaatcaacttccccttaa |
253 |
Q |
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| T |
43060748 |
cccgatttaattgcaaggcacaatatcattcaagcatataaaatatcatacctcaatatcctttaagtgtctcaaacatcaacaatcaactttcccttaa |
43060649 |
T |
|
| Q |
254 |
tcttctt |
260 |
Q |
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||||||| |
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| T |
43060648 |
tcttctt |
43060642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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