View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_18 (Length: 248)
Name: NF20794_low_18
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 9612688 - 9612571
Alignment:
| Q |
125 |
accttataatactttaagcaagcctctactagtgtgttgaacagtactcaaaaagtattataaatagagcatcctcaaagtgtcttctcacaaactacta |
224 |
Q |
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| T |
9612688 |
accttataatactttaagcaagcctctactagtgtgttgaacagtactcaaaaagtattataaatagagcatcctcaaagtgtcttctcacaaactacta |
9612589 |
T |
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| Q |
225 |
caaaatatcttcatctca |
242 |
Q |
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|||||||||||| ||||| |
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| T |
9612588 |
caaaatatcttcctctca |
9612571 |
T |
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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9612812 - 9612729
Alignment:
| Q |
1 |
atagttaaaagaaggctaaccacatgtttaacctttgtaagaatagttcctaatatgtttaactaagaaccttatctctctatg |
84 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9612812 |
atagttaaaagaagactaaccacatgtttaacctttgtaagaatagttcctaatatgtttaactaagaaccttatctctctatg |
9612729 |
T |
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