View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_23 (Length: 228)
Name: NF20794_low_23
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 38954247 - 38954420
Alignment:
| Q |
17 |
acacgttacacgcagtaagaggggaaccaaccaaagtactaacaaattttcatttcctgagtctattaactctattgtttattagta-ttacacatcaca |
115 |
Q |
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| T |
38954247 |
acacgttacacgcagtaagaggggaaccaaccaaagtactaacaaattttcatttcctgagtctattaactctattgtttattagtatttacacatcaca |
38954346 |
T |
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| Q |
116 |
ccatgcacaaaggaaataatatacaccattctctgtacgacattgcaattacaaataacttaaaaataagcaca |
189 |
Q |
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| T |
38954347 |
ccatgcacaaaggaaataatatacaccattctctgtacgacattgcaattacaaataacttaaaaataagcaca |
38954420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 38955368 - 38955327
Alignment:
| Q |
187 |
acaccctctttctctcatattttccaagcttgtccaaaggta |
228 |
Q |
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| T |
38955368 |
acaccctctttctctcatattttccaatgttgtccaaaggta |
38955327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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