View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_25 (Length: 223)
Name: NF20794_low_25
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 25884936 - 25885123
Alignment:
| Q |
18 |
gaaaacaaacctgggttatagtcaccaaacacaacctgagcaagagcccttccaccaagttcaccaggataaccagcccaaatagtccctccaattttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25884936 |
gaaaacaaacctgggttatagtcaccaaacacaacctgagcaagagcccttccaccaagttcaccaggataaccagcccaaataatccctccaattttgt |
25885035 |
T |
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| Q |
118 |
cattattcttagcaaaagtaatatcaacaggaccaccacacaaaatgaccaaaataacaggtttcttagaagctttagcaacactgtt |
205 |
Q |
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| T |
25885036 |
cattattcttagcaaaagtaatatcaacaggaccaccacacaaaattaccaaaataacaggcttcttggaagctttagcaacactgtt |
25885123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 25925059 - 25925246
Alignment:
| Q |
18 |
gaaaacaaacctgggttatagtcaccaaacacaacctgagcaagagcccttccaccaagttcaccaggataaccagcccaaatagtccctccaattttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25925059 |
gaaaacaaacctgggttatagtcaccaaacacaacctgagcaagagcccttccaccaagttcaccaggataaccagcccaaataatccctccaattttgt |
25925158 |
T |
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| Q |
118 |
cattattcttagcaaaagtaatatcaacaggaccaccacacaaaatgaccaaaataacaggtttcttagaagctttagcaacactgtt |
205 |
Q |
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| T |
25925159 |
cattattcttagcaaaagtaatatcaacaggaccaccacacaaaagcaccaaaataacaggcttcttagaagctttagcaacactgtt |
25925246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 25906564 - 25906751
Alignment:
| Q |
18 |
gaaaacaaacctgggttatagtcaccaaacacaacctgagcaagagcccttccaccaagttcaccaggataaccagcccaaatagtccctccaattttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25906564 |
gaaaacaaacctgggttatagtcaccaaacacaacctgagcaagagcccttccaccaagttcaccaggataaccagcccaaataatccctccaattttgt |
25906663 |
T |
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| Q |
118 |
cattattcttagcaaaagtaatatcaacaggaccaccacacaaaatgaccaaaataacaggtttcttagaagctttagcaacactgtt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||||||||| |
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| T |
25906664 |
cattattcttagcaaaagtaatatcaacaggaccaccgcacaaaagcaccaaaataacaggcttcttagaagctttcgcaacactgtt |
25906751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 25960503 - 25960319
Alignment:
| Q |
18 |
gaaaacaaacctgggttatagtcaccaaacacaacctgagcaagagcccttccaccaagttcaccaggataaccagcccaaatagtccctccaattttgt |
117 |
Q |
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|
|||||| |||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||| |
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| T |
25960503 |
gaaaactaaccagggttatagtcaccaaacacaacctgagccagagccattccaccaagttcaccaggataaccagcccacaaaatccctccaattttgt |
25960404 |
T |
|
| Q |
118 |
cattattcttagcaaaagtaatatcaacaggaccaccacacaaaatgaccaaaataacaggtttcttagaagctttagcaacact |
202 |
Q |
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||| | ||||||||||| |||||||||||| |||||||| |||| ||||||||||| ||| | ||||| |||||||||||||| |
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| T |
25960403 |
catcaaccttagcaaaagaaatatcaacagggccaccacagaaaagtaccaaaataaccggtcttttagacgctttagcaacact |
25960319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 33421222 - 33421352
Alignment:
| Q |
75 |
agttcaccaggataaccagcccaaatagtccctccaattttgtcattattcttagcaaaagtaatatcaacaggaccaccacacaaaatgaccaaaataa |
174 |
Q |
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|||||||| |||||||||||||| ||| | ||||||||||| || ||||| ||||| || ||||||||| |||||| ||||| | | |||||||||| |
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| T |
33421222 |
agttcacccggataaccagcccagataatacctccaattttatcgttatttttagctgaactaatatcaataggacctccacaaaggagcaccaaaataa |
33421321 |
T |
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| Q |
175 |
caggtttcttagaagctttagcaacactgtt |
205 |
Q |
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| ||| ||||||||||||| ||||||||||| |
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| T |
33421322 |
ccggtctcttagaagctttggcaacactgtt |
33421352 |
T |
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