View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_27 (Length: 209)
Name: NF20794_low_27
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 11387024 - 11387201
Alignment:
| Q |
20 |
aattttacgccactcggtatcaaatccgatcaccttggttccataattgtctgtagggtgtaagaaagacgatatatgtttgtcaatcactttcttttga |
119 |
Q |
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| T |
11387024 |
aattttacgccactcggtatcaaatccgatcaccttggttacataattgtctgtagggtgtaagaaagacgacatatgtttgtcaatcactttcttttga |
11387123 |
T |
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| Q |
120 |
tttgtaatagtggttttgatttccattccatttagctcaaacgatagaactttggtgtcatacatgatgttctctgct |
197 |
Q |
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| T |
11387124 |
tttgtaatagtggttttgatttccattccatttagctcaaacgatagaactttggtgtcatacatgatgttctctgct |
11387201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 11393018 - 11393184
Alignment:
| Q |
20 |
aattttacgccactcggtatcaaatccgatcaccttggttccataattgtctgtagggtgtaagaaagacgatatatgtttgtcaatcactttcttttga |
119 |
Q |
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| T |
11393018 |
aattttacgccactcagtatcaaatccgatcaccttggttccatgattgtctgtagggcgtaagaaagacgatatatgttcgtcaatcactttcttttga |
11393117 |
T |
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| Q |
120 |
tttgtaatagtggttttgatttccattccatttagctcaaacgatagaactttggtgtcatacatga |
186 |
Q |
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| T |
11393118 |
tctgtaatggtggttttgatttccattccatttagctcaaacgatagaactttggtgtcatgcatga |
11393184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 17198525 - 17198613
Alignment:
| Q |
26 |
acgccactcggtatcaaatccgatcaccttggttccataattgtctgtagggtgtaagaaagacgatatatgtttgtcaatcactttct |
114 |
Q |
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| T |
17198525 |
acgccactcggtatcaatcccaataaccttcgttccgtgattgttggtagggcgtaagaaagatgatatatgatcgtcaatcaatttct |
17198613 |
T |
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