View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_4 (Length: 515)
Name: NF20794_low_4
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 12960310 - 12960807
Alignment:
| Q |
1 |
tgaaatgaattcgaatgtgtaatgacatgctcttctatgtactccatgtttgctcctgtcatgacgggtaacatattcgtgcattttctaaccttaggac |
100 |
Q |
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| T |
12960310 |
tgaaaagaattcgaatgtgtaatgacatgctcttctatgtactccatgtttgctcctgtcatgacgggtaacatattagtgcattttctaaccttaggac |
12960409 |
T |
|
| Q |
101 |
gnnnnnnntaagagcattttgattgttcctgaaaagcttggagaattgtatagaaaacaagaaactttggcaagtacacattcccagcagaaaatatatg |
200 |
Q |
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| T |
12960410 |
gaaaaaaataagagcattttgattgtccctgaaaagcttggagaattgtatagaaaacaagaaactttggcaagtacacattcccagcagaaaatatatg |
12960509 |
T |
|
| Q |
201 |
ctgctagtttttctttttctttgaagtcagtacttaattacaataattacatgaaatagaataacaaatattcactactagtttctttttcatggcaaga |
300 |
Q |
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| T |
12960510 |
ctgctagtttttctttttctttgaagtcagtacttaattacaataattacatgaaatagaataacaaatatccactaatagtttctttttcatggcaaga |
12960609 |
T |
|
| Q |
301 |
cttgagaattacaatacttacatggaaacaataatttgatcatgatgagtggttattcaatatcatgataagtggaacgacaatttgatagtgatgagtg |
400 |
Q |
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| T |
12960610 |
cttgagaattacaatacttacatggaaacaataatttgatcatgatgagtggttatccaatatcatgataagtggaacgacaatttgatagtgatgagtg |
12960709 |
T |
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| Q |
401 |
gttacaagacttggaaaatatttctgcaggctcctcca---atgtaaagtttatgctatatcctttttaccaacaaatatcaaaagtagcacccacca |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12960710 |
gttacaagacttggaaaatatttctgcaggctcctccagacatgtaaagtttatgctatatcctttttcccaacaaatatcaaaagtagcacccacca |
12960807 |
T |
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