View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_8 (Length: 430)
Name: NF20794_low_8
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 7906605 - 7906209
Alignment:
| Q |
16 |
aacaaaacaaagcatgagagaccgccacggaatgaattcggaaagaaatgtggcgatcacagagattatttcggaagctgaagctagaaagtgttgttat |
115 |
Q |
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| T |
7906605 |
aacaaaacaaagcatgaga--ccgccacggaatgaattcggaaagaaatgtggcgatcacagagattatttcggaagctgaagctagaaagtgttgttat |
7906508 |
T |
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| Q |
116 |
tcagcgtcgatggatgagcacggtgatgagtttcggcgacggaacccacggagcactcggtttaccaacaaccaccgtcggtataggaacacatgcatac |
215 |
Q |
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| T |
7906507 |
tcagcgtcgatggatgagcacggtgatgagtttcggcgacggaacccacggagcactcggtttaccaacaaccaccgtcggtataggaacacatgcatac |
7906408 |
T |
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| Q |
216 |
gaaccaacaccaattccatctcttccttccgacattctcaccgtccacgccggtcactaccactccctcgcaaccacttcccaaggtcatctttgggctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7906407 |
gaaccaacaccaattccatctcttccttccgacattctcaccgtccacgccggtcactaccactccctcgcaaccacttcccaaggtcatctttgggctt |
7906308 |
T |
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| Q |
316 |
ggggtagaaacaacgaagcccagctgggccgtgggctttccgctagagaaacttggaatgagcctagaagagtggaggggttggaacatgtgaaggttt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7906307 |
ggggtagaaacaacgaagcccagctgggccgtgggctttcctctagagaaacttggaatgagcctagaagagtggaggggttggaacatgtgaatgttt |
7906209 |
T |
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