View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20794_low_9 (Length: 430)
Name: NF20794_low_9
Description: NF20794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20794_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 215 - 415
Target Start/End: Original strand, 31257416 - 31257616
Alignment:
| Q |
215 |
gcctgatacatttcttaacaatagattaagagaaaaattgcaacaagctcttctactatttgccaaacataactttagtaaaattacatgtctgagcaca |
314 |
Q |
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| T |
31257416 |
gcctgatacatttcttaacaatagattaagagaaaaattgcaacaagctcttctactatttgccaaacataactttagtaaaattacatgtctgagcaca |
31257515 |
T |
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| Q |
315 |
ttgattttattttcaaatcttattcactataatgcatagcaattttatagatgtatacaatgcaattcctacctatatatcaatgtaaatacttcagtac |
414 |
Q |
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| T |
31257516 |
ttgattttattttcaaatcttattcactataatgcatagcaattttatagatgtatacaatgcaattcctacctatatatcaatgtaaatacttcagtac |
31257615 |
T |
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| Q |
415 |
t |
415 |
Q |
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| T |
31257616 |
t |
31257616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 31257212 - 31257371
Alignment:
| Q |
11 |
cacagaataataaatagatacatgnnnnnnngttaatttagatttgaggaaaagtttgagaattacatacataaattgaaggtattgcaacctggtcagt |
110 |
Q |
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| T |
31257212 |
cacagaataataaatagatacatgtttttttgttaatttagatttgaggaaaagtttgagaattacatacataaattgaaggtattgcaacctggtcagt |
31257311 |
T |
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| Q |
111 |
tctggtgggagagtgccgggaagattttgccctttcaaagttctgtatgtacattttgcc |
170 |
Q |
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| T |
31257312 |
tctggtgggagagtgccgggaagattttgccctttcaaagttctgtatgtacattttgcc |
31257371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 31294397 - 31294525
Alignment:
| Q |
42 |
gttaatttagatttgaggaaaagtttgagaattacatacataaattgaaggtattgcaacctggtcagttctggtgggagagtgccgggaagattttgcc |
141 |
Q |
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| T |
31294397 |
gttaatttagatttgaggaaaagttcaagaactacgtacataatttgaaggtatcgcaacctgttcagttctggtggcagagtgccggggagattttgcc |
31294496 |
T |
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| Q |
142 |
ctttcaaagttctgtatgtacattttgcc |
170 |
Q |
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| T |
31294497 |
ctttcaaagttctttatgtacattttgcc |
31294525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 31388682 - 31388785
Alignment:
| Q |
52 |
atttgaggaaaagtttgagaattacatacataaattgaaggtattgcaacctggtcagttctggtgggagagtgccgggaagattttgccctttcaaagt |
151 |
Q |
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| T |
31388682 |
atttgaggaaaagtttgagaaatacatacataatttgaaggtaacgcaacctgttcagttccggtgggagagtgccggggagatcttggtctttcaaact |
31388781 |
T |
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| Q |
152 |
tctg |
155 |
Q |
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|||| |
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| T |
31388782 |
tctg |
31388785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 31362010 - 31362105
Alignment:
| Q |
72 |
attacatacataaattgaaggtattgcaacctggtcagttctggtgggagagtgccgggaagattttgccctttcaaagttctgtatgtacatttt |
167 |
Q |
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| T |
31362010 |
attacatacataatttgaagataatgcaacctgttcatttccggtgggagagttcccgggagattttgccctttcaaagttctgtatgttcatttt |
31362105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 31376426 - 31376510
Alignment:
| Q |
74 |
tacatacataaattgaaggtattgcaacctggtcagttctggtgggagagtgccgggaagattttgccctttcaaagttctgtat |
158 |
Q |
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| T |
31376426 |
tacatacataatttgaaggtaacgcaacctgttcagttccggtgggagagtgccggggagattttgctctttcaaacttctgtat |
31376510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 31308859 - 31308950
Alignment:
| Q |
70 |
gaattacatacataaattgaaggtattgcaacctggtcagttctggtgggagagtgccgggaagattttgccctttcaaagttctgtatgta |
161 |
Q |
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| T |
31308859 |
gaattacatacatagttcgaaggtaatgcaacctggtaaattctggtgggagagtccccgggagattttgccctttcaaaattctgtatgta |
31308950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 31283266 - 31283363
Alignment:
| Q |
61 |
aaagtttgagaattacatacataaattgaaggtattgcaacctggtcagttctggtgggagagtgccgggaagattttgccctttcaaagttctgtat |
158 |
Q |
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| T |
31283266 |
aaagtttgggaaatacatacataatttgaaggtaacgcaacctgttcagttccgttgggagagtgccgaggagattttggtctttcaaacttctgtat |
31283363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 31417732 - 31417650
Alignment:
| Q |
45 |
aatttagatttgaggaaaagtttgagaattacatacataaattgaaggtattgcaacctggtcagttctggtgggagagtgcc |
127 |
Q |
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| T |
31417732 |
aatttggatatgagggaaagtttaggaattacgtacataacttgaaggtaacgcaacctattcagttctgaggggagagtgcc |
31417650 |
T |
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