View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20795_high_2 (Length: 397)
Name: NF20795_high_2
Description: NF20795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20795_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 38372126 - 38372498
Alignment:
| Q |
13 |
aaaatctataaaacattgatgtcaaacatttgaaagattattaannnnnnnnatagctgacgtttgaagttgtagtatccaacttactagtatattttta |
112 |
Q |
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| T |
38372126 |
aaaatctttaaaacgttgatgtcaaacatttgaaagattattaaatttttttatagctgacgtttgaagttgtagtatccaacttactagtatattttta |
38372225 |
T |
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| Q |
113 |
ttacaagcacgtttctcaggttgaagcatggtagaaagactactaaaatagtcttgaaagtttccaaaaacctgccatgcaatgcaaattaaatgatgat |
212 |
Q |
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| T |
38372226 |
ttacaagcacgtttctcaggttgaagcatggtagaaagactactaaaatagtcttgaaagtttccaaaaacctgccatgcaatgcaaattaaatgatgat |
38372325 |
T |
|
| Q |
213 |
tccgttattcgtttatgcaactaccgacaaaaggtgttcctaaggtcaatttaagacatgaaaaatcaatcttatttacatggtattgttgacattttca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38372326 |
tccgttattcgtttatgcaactaccgacaaaaggtgttcctaaggtcaatttaagacatgaaaaatcaatcttatttacatggtattgttgacattttca |
38372425 |
T |
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| Q |
313 |
gtggcaggaaaggaaatttattacataaaagaatagaccatgtattctccccaagctttgaataagtagtact |
385 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38372426 |
gtggcaggaaaggaaatttatgacataaaagaatagaccatgaattctccccaagctttgaataagtagtact |
38372498 |
T |
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