View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20795_high_3 (Length: 357)
Name: NF20795_high_3
Description: NF20795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20795_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 38628647 - 38628365
Alignment:
| Q |
19 |
gatttttcattattctttaccacccatcatatgtggtggaagacattagattgcaacttgcaagtatttaaaattttagtttgttaatttcttataacat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38628647 |
gatttttcattattctttaccacccatcatatgtgg---aagacattagattgcaacttgcaagtatttaaaattttagtttgttaatttcttataacat |
38628551 |
T |
|
| Q |
119 |
tatgaaatgaaatattcatgtgtatcgttaaattgttccgacttaatatcaatttttatataagaaaaaattagattgacaagataatatcatagtctaa |
218 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38628550 |
tatgaaatgaaatgttcctgtgtatcgttaaagtgttccgacttactatcaatttttttataagaaaaaattagattgacaagataatatcatagtctaa |
38628451 |
T |
|
| Q |
219 |
actctaaagtatgaaagatttttggcgtnnnnnnnntacttataagcatatttacattcacatttttctaaaggtttgttgactcaa |
305 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
38628450 |
actctaaagtatgaaagatttttggagt-aaaaaaatacttataagcatatttgcattcacatttttctaaaggtttggtgactcaa |
38628365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University