View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20795_high_6 (Length: 313)
Name: NF20795_high_6
Description: NF20795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20795_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 61 - 291
Target Start/End: Complemental strand, 48066152 - 48065922
Alignment:
| Q |
61 |
cgtatgacgataggaaaagacaaaatttgaatatggggtgaggnnnnnnnnnnnncaccatagaagataatgcaaatacatgaacggtagaaaatttgaa |
160 |
Q |
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| T |
48066152 |
cgtatgacgataggaaaagacaaaatttgaatatggggtgaggaaaaaacaaaaacaccatagaagataatgcaaatacatgaacggtagaaaatttgaa |
48066053 |
T |
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| Q |
161 |
tgaagggaaatcctcctattccaaggtgcaattttttaggtgaaaaatttaaaaaacttgtagctaaaattataacatttagaaccacaaacaaacttgg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48066052 |
tgaagggaaatcctcctattccaaggtgcaattttttaggtgaaaaatttaaaaaagttgtagctaaaattataacatttagaaccacaaacaaacttgg |
48065953 |
T |
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| Q |
261 |
taagttacaatcttagtaaaaagataaagac |
291 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
48065952 |
taagttacaatcttagtaaaaagataaagac |
48065922 |
T |
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