View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20795_low_1 (Length: 400)
Name: NF20795_low_1
Description: NF20795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20795_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 41749793 - 41749568
Alignment:
| Q |
17 |
aaatcaagttgctgacgcgtttgcaaaacatggtctaactaactcccaatggagtagctcggtttttaatttactggcatatttcaattattttgctatg |
116 |
Q |
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| T |
41749793 |
aaatcaagttgctgacgcgtttgcaaaacatggtctaact----cccaatggagtagctcggtttttaatttactggcatatttcaattattttgctatg |
41749698 |
T |
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| Q |
117 |
ttagtagataattttgggattgtgtttccttgaggtttttaactttgttgatttgttttgctatgttagtagataacgttgttgattttcccttttggtc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41749697 |
ttagtagataattttgggattgtgtttccttgaggtttttaactttgttgatttgttttgctatgttagtagataacgttgttgattttcccttttggtc |
41749598 |
T |
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| Q |
217 |
acnnnnnnngaagagggacatgagaaatat |
246 |
Q |
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|| ||||||||||||||||||||| |
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| T |
41749597 |
acaaaaaaagaagagggacatgagaaatat |
41749568 |
T |
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