View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20795_low_10 (Length: 249)
Name: NF20795_low_10
Description: NF20795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20795_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 31384143 - 31384381
Alignment:
| Q |
1 |
ctttaccctggtccaagctcaaacccaaatgataaaccggtgcatgaaacccccctccggcgccaagatgagtggcagcgtcgccggagttaagctgcag |
100 |
Q |
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| T |
31384143 |
ctttaccctggtccaagctcaaacccaaatgataaaccggtgcatgaaacccccctccggcgccaaggtgagaggccgcgtcgccggagttaagttgcag |
31384242 |
T |
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| Q |
101 |
catcatcggagaagcgtcggttccgtcggcggaggtgaaattcgggagaccgagaatttgttcaaggaaatcgtcggcgggtgtatcggaaggatgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31384243 |
catcatcggagaagcgtcggttccgtcggcggaggtgaaattcgggagaccgagaatttgttcaaggaaatcgtcggcgggtgtatcggaaggatgattc |
31384342 |
T |
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| Q |
201 |
gccataactgaaaagaaaagaaaatttgttgttgttgtt |
239 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
31384343 |
gccataactgaaaagaaaagaaaatttgtagttgttgtt |
31384381 |
T |
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