View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20795_low_11 (Length: 223)
Name: NF20795_low_11
Description: NF20795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20795_low_11 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2038561 - 2038357
Alignment:
| Q |
1 |
caaaatcctatcatttctaccacaagaatatcttctctatgttgcaagatcctaaataaaataacttctagaacttaacactttataagatcaataagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2038561 |
caaaatcctatcatttctaccacaagaatatcttctctatgttgcaagatcctaaataaaataacttctagaacttaacactttataagatcaataagga |
2038462 |
T |
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| Q |
101 |
aaaagaatctaaacttgaaatggaattgtaaagattgagaaaagagtggaatatctcttacttggtgacgatgaatttcttatagtggactctaatctct |
200 |
Q |
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| T |
2038461 |
aaaagaatctaaacttgaaatggaattgtaaagattgagaaaagagtggaatatctcttacttggtgacgatgaatttcttatagtggactctaatctct |
2038362 |
T |
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| Q |
201 |
ctcga |
205 |
Q |
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||||| |
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| T |
2038361 |
ctcga |
2038357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29963598 - 29963674
Alignment:
| Q |
1 |
caaaatcctatcatttctaccacaagaatatcttctctatgttgcaagatcctaaataaaataacttctagaactta |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29963598 |
caaaatcctatcatttctaccacaagaatatcttctctatgttgcaagattctaaataaaataacttctagaactta |
29963674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 29963671 - 29963719
Alignment:
| Q |
157 |
cttacttggtgacgatgaatttcttatagtggactctaatctctctcga |
205 |
Q |
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| T |
29963671 |
cttacttggtgatgatgaatttcttaaagtggactctaatctctctcga |
29963719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 35162 - 35261
Alignment:
| Q |
1 |
caaaatcctatcatttctaccacaagaatatcttctctatgttgcaagatcctaaataaaataacttctagaacttaacactttata-agatcaataagg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35162 |
caaaatcctatcatttctaccacaagaatatcttctctatgttgcaagatcctaaataaaataacttctagaacttaacactttatatcgatcaataagg |
35261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 8889370 - 8889324
Alignment:
| Q |
156 |
tcttacttggtgacgatgaatttcttatagtggactctaatctctct |
202 |
Q |
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||||||||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
8889370 |
tcttacttggtgatgatgaatttcttaaagttgactctaatctctct |
8889324 |
T |
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