View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20795_low_8 (Length: 250)
Name: NF20795_low_8
Description: NF20795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20795_low_8 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] scaffold0172 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 2038813 - 2038573
Alignment:
| Q |
7 |
tagattatactaaagaatactaactcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctc |
106 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2038813 |
tagattctactaaagaata---actcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctt |
2038717 |
T |
|
| Q |
107 |
tagtcgaacctgaacctcttttatgtttctagtaatttctaatagttaagaaaaataaattcaactcatttgaatacttgattttatgttttcaggctac |
206 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2038716 |
tagtcgaatctgaacctcttctatgtttctagtaatttctaatagttaagaaaaataaattcaactcatttgaatacttgattttatgttttcaggctac |
2038617 |
T |
|
| Q |
207 |
attaaattggttcacggcactagtgtacgtatcaccctatatac |
250 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2038616 |
attaaattggttcacggcactagtatacgtatcaccctatatac |
2038573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 29963349 - 29963583
Alignment:
| Q |
7 |
tagattatactaaagaatactaactcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctc |
106 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29963349 |
tagattctactaaagaata---actcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctc |
29963445 |
T |
|
| Q |
107 |
tagtcgaacctgaacctcttttatgtttctagtaatttctaatagttaagaaaaataaattcaactcatttgaatacttgattttatgttttcaggctac |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29963446 |
tagtcgaacctgaacctcttctatgtttctaaaaa-----aatagttaag-aaaataaattcaactcatttgaatacttgattttatgttttcaagctac |
29963539 |
T |
|
| Q |
207 |
attaaattggttcacggcactagtgtacgtatcaccctatatac |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29963540 |
attaaattggttcacggcactagtgtacgtatccccctatatac |
29963583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 34909 - 35150
Alignment:
| Q |
7 |
tagattatactaaagaatactaactcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctc |
106 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34909 |
tagattctactaaagaata---actcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctc |
35005 |
T |
|
| Q |
107 |
tagtcgaacctgaacctctt--ttatgtttctagtaatttctaatagttaagaaaaataaattcaactcatttgaatacttgattttatgttttcaggct |
204 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35006 |
tagtcgaacatgaacctcttccatatgtttctagtaatttctaatagttaag-aaaataaattcaactcatttgaatacttgattttatgttttcaggct |
35104 |
T |
|
| Q |
205 |
acattaaattggttcacggcactagtgtacgtatcaccctatatac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35105 |
acattaaattggttcacggcactagtgtacgtatcaccctatatac |
35150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University