View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20795_low_9 (Length: 250)
Name: NF20795_low_9
Description: NF20795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20795_low_9 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 38628060 - 38628299
Alignment:
| Q |
11 |
aatataacagtaaacctactatttaagtaatccttctctaatcttggccattgaatttttaaataatataacaaaggtgaaaaactcacttttgtatggt |
110 |
Q |
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| T |
38628060 |
aatataacactaaacctactatttaagtaatccttctctaatcttggccattgaatttttaaataatatatcaaaggtgaaaaactcacttttgtatggt |
38628159 |
T |
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| Q |
111 |
acctaaaaacatggacttgtgtatactaaacgccatccttgtttagacaaatgacaaattgcttgaaaaaacaaattctattaaagaattttggtggaac |
210 |
Q |
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| T |
38628160 |
acccaaaaatatggacttgtgtatactaaatgccatccttgtttagacaaacgacaagttgcttgaaaaaacaaattctattaaagaattttggtggaac |
38628259 |
T |
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| Q |
211 |
agttattgatcacgttatacttactttatgatcgaacttt |
250 |
Q |
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| T |
38628260 |
agttattgatcacgttatacttactttatgatcgaacttt |
38628299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 41234828 - 41234951
Alignment:
| Q |
22 |
aaacctactatttaagtaatccttctctaatcttggccattgaatttttaaataatataacaaaggtgaaaaactcacttttgtatggtacctaaaaaca |
121 |
Q |
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| T |
41234828 |
aaacctactaaacaagtactcattctttaatcttagccattgaattttttaataatatatcaatggtgaaaaactcacttttgtatgatacccaaaaaca |
41234927 |
T |
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| Q |
122 |
tggacttgtgtatactaaacgcca |
145 |
Q |
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| T |
41234928 |
tgaacttgtgtatactaaatgcca |
41234951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 43019197 - 43019256
Alignment:
| Q |
86 |
ggtgaaaaactcacttttgtatggtacctaaaaacatggacttgtgtatactaaacgcca |
145 |
Q |
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| T |
43019197 |
ggtgaaaaactcacttttgtatggtacccaaaaacttggacttgtgtatgctaaatgcca |
43019256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 13463916 - 13463974
Alignment:
| Q |
50 |
aatcttggccattgaatttttaaataatataacaaaggtgaaaaactcacttttgtatg |
108 |
Q |
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| T |
13463916 |
aatcttggccattgaattgtttaatattatatcaatggtgaaaaacacatttttgtatg |
13463974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 41962068 - 41962191
Alignment:
| Q |
22 |
aaacctactatttaagtaatccttctctaatcttggccattgaatttttaaataatataacaaaggtgaaaaactcacttttgtatggtacctaaaaaca |
121 |
Q |
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| T |
41962068 |
aaacctactaaacaagtactcattctttaatcttagccattgaattttttaataatatatcaatggtgaaaaactcacttttgtataatacccaaaaaca |
41962167 |
T |
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| Q |
122 |
tggacttgtgtatactaaacgcca |
145 |
Q |
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| T |
41962168 |
tgaacttgtgtatactaaatgcca |
41962191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 8951575 - 8951697
Alignment:
| Q |
11 |
aatataacagtaaacctactatttaagtaatccttctctaatcttggccattgaatttttaaataatataacaaaggtgaaaaactcacttttgtatggt |
110 |
Q |
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| T |
8951575 |
aatataacaccaaacccactatacaagtaaccattctttaatcttggccattgaattttttta-attatatcaatggtgaaaaactcacttttatatgat |
8951673 |
T |
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| Q |
111 |
acctaaaaacatggacttgtgtat |
134 |
Q |
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| T |
8951674 |
acccaaaaacatagacttgtgtat |
8951697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 233665 - 233782
Alignment:
| Q |
11 |
aatataacagtaaacctactatttaagtaatccttctctaatcttggccattgaatttttaaataatataacaaaggtgaaaaactcacttttgtatggt |
110 |
Q |
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||||||||| ||||| ||||| |||||| ||||||| | ||| ||||| |||||||| ||||||||| || ||| ||||||||||||||| ||||| |
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| T |
233665 |
aatataacaagaaacccactatataagtagtccttcttcagtctaagccatcgaattttttaataatatattaatggtaaaaaactcacttttgaatggt |
233764 |
T |
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| Q |
111 |
acctaaaaacatggactt |
128 |
Q |
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| T |
233765 |
acctaaaaacttggactt |
233782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 233034 - 232988
Alignment:
| Q |
99 |
cttttgtatggtacctaaaaacatggacttgtgtatactaaacgcca |
145 |
Q |
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| T |
233034 |
cttttgtatgatacacaaaaacatggacttgtgtatactaaatgcca |
232988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 7549493 - 7549621
Alignment:
| Q |
11 |
aatataacagtaaacctactatttaagtaatccttctctaatcttggccattgaatttttaaataatataacaaaggtgaaaaactcacttttgtatggt |
110 |
Q |
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||||||| | |||||| ||||| |||||| | |||| ||||||||||||||||||| || ||||||||| ||| ||| ||||| || || |||||| | |
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| T |
7549493 |
aatataaaactaaacccactatacaagtaaccattctttaatcttggccattgaattgtttaataatatatcaatggtaaaaaatacatttgtgtatgat |
7549592 |
T |
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| Q |
111 |
acctaaaaacatggacttgtgtatactaa |
139 |
Q |
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| T |
7549593 |
acacaaaaagattgacttgtgtatgctaa |
7549621 |
T |
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