View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20796_high_2 (Length: 537)

Name: NF20796_high_2
Description: NF20796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20796_high_2
NF20796_high_2
[»] chr7 (2 HSPs)
chr7 (1-523)||(47627931-47628452)
chr7 (344-386)||(47451267-47451309)
[»] chr2 (3 HSPs)
chr2 (340-395)||(41513853-41513908)
chr2 (349-383)||(33719005-33719039)
chr2 (336-368)||(38771171-38771203)
[»] chr1 (2 HSPs)
chr1 (115-192)||(38474798-38474875)
chr1 (359-391)||(41891989-41892021)
[»] chr4 (1 HSPs)
chr4 (340-390)||(43081595-43081645)
[»] chr6 (1 HSPs)
chr6 (356-392)||(716302-716338)


Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 47628452 - 47627931
Alignment:
Q  1 ctaatgtcagaggtgtctgtgcttcagagcttacaactaagaaaagattctgttacattctgcaaatagtggcgacttttggaatttggattgatatgaa 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47628452 ctaatgtcagaggtgtctctgcttcagagcttacaactaagaaaagattctgttacattctgcaaatagtggcgacttttggaatttggattgatatgaa 47628353  T
Q  101 aggagtaaatcatgattttagtccttgaaattatgatggttgattagtttagtcccttaaatttgtgaaataacaatctagtcccttaaattgaaaaacg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47628352 aggagtaaatcatgattttagtccttgaaattatgatggttgattagtttagtcccttaaatttgtgaaataacaatctagtcccttaaattgaaaaact 47628253  T
Q  201 tctgtccatttggtcttttttccaaatttaacactacaaatacaattttgaaggttttatatttgtcttgatgtaacacgacaccattcaaatcaatatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  47628252 tctgtccatttggtcttttttccaaatttaacactacaaatacaattttgaaggttttatatttgtctggatgtaacacgacaccattcaaatcaatacg 47628153  T
Q  301 tatacctttcgtaggttttaatggatgcttattagagagatattttggtggagagactaaattgattgacattatttaatttaagggactaacttaaata 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47628152 tatacctttcgtaggttttaatggatgcttattagagagatattttggtggaga-actaaattgattgacattatttaatttaagggactaacttaaata 47628054  T
Q  401 ttaattgaagttgagggattaaattactcgacctttacaatttgaaggaccaagatgatcattaagtttttctaacttttgtgctgctaaagttcttaga 500  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47628053 ttaattaaagttgagggattaaattactcgacctttgcaatttgaaggaccaagatgatcattaagtttttctaacttttgtgctgctatagttcttaga 47627954  T
Q  501 ttttggttttttgctgtggttcc 523  Q
    |||||||||||||||||||||||    
T  47627953 ttttggttttttgctgtggttcc 47627931  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 47451309 - 47451267
Alignment:
Q  344 tttggtggagagactaaattgattgacattatttaatttaagg 386  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||    
T  47451309 tttgttggagggactaaattgattgacattttttaatttaagg 47451267  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 41513908 - 41513853
Alignment:
Q  340 atattttggtggagagactaaattgattgacattatttaatttaagggactaactt 395  Q
    |||||||| ||||||||||||||||||||| ||| || ||||||||||||||||||    
T  41513908 atattttgatggagagactaaattgattgatatttttcaatttaagggactaactt 41513853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 383
Target Start/End: Original strand, 33719005 - 33719039
Alignment:
Q  349 tggagagactaaattgattgacattatttaattta 383  Q
    ||||||||||||||||||||||||| |||||||||    
T  33719005 tggagagactaaattgattgacattttttaattta 33719039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 368
Target Start/End: Original strand, 38771171 - 38771203
Alignment:
Q  336 agagatattttggtggagagactaaattgattg 368  Q
    |||||||||||||| ||||||||||||||||||    
T  38771171 agagatattttggtagagagactaaattgattg 38771203  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 38474875 - 38474798
Alignment:
Q  115 attttagtccttgaaattatgatggttgattagtttagtcccttaaatttgtgaaataacaatctagtcccttaaatt 192  Q
    |||||||||||||||||| | | || || | | |||||||||| ||||||| |||||| |||| ||||||||||||||    
T  38474875 attttagtccttgaaattgtaacgggtggtcaatttagtccctaaaatttgagaaatagcaatttagtcccttaaatt 38474798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 391
Target Start/End: Complemental strand, 41892021 - 41891989
Alignment:
Q  359 aaattgattgacattatttaatttaagggacta 391  Q
    ||||||||||||||| |||||||||||||||||    
T  41892021 aaattgattgacattctttaatttaagggacta 41891989  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 43081645 - 43081595
Alignment:
Q  340 atattttggtggagagactaaattgattgacattatttaatttaagggact 390  Q
    ||||||| |||||| |||||||||||||||| || ||||||||||| ||||    
T  43081645 atattttagtggagggactaaattgattgactttctttaatttaagcgact 43081595  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 716302 - 716338
Alignment:
Q  356 actaaattgattgacattatttaatttaagggactaa 392  Q
    |||||||||||||||||| |||||||| |||||||||    
T  716302 actaaattgattgacattctttaatttgagggactaa 716338  T

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