View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20796_high_3 (Length: 342)
Name: NF20796_high_3
Description: NF20796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20796_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 44884837 - 44885160
Alignment:
| Q |
2 |
ggatgtcgaagaatatggtacaacgtctcaccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaa |
101 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44884837 |
ggatgtcga-gaacatggtacaacgtctcaccccaaatgccaacaagatataccatctctctggtactcagaaatttgagctgccaaaagaggatgttaa |
44884935 |
T |
|
| Q |
102 |
aatagcgaacatattccaagctgttgaagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcattaag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44884936 |
aatagcgaacatattccaagctgttgaagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcattaag |
44885035 |
T |
|
| Q |
202 |
gtagcacgcgaggctcgtgcatttgataccttgtcataatttgtactcaccatgcaagttatatgcctccagagaatttgaccagttaatatgaagtaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44885036 |
gtagcacgcgaggctcgtgcatttgataccttgtcataatttgtactcaccatgcaagttatttgcctccagagaatttgaccagttaatatgaagtaat |
44885135 |
T |
|
| Q |
302 |
atatggttaaatggttctgagttct |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44885136 |
atatggttaaatggttctgagttct |
44885160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 319
Target Start/End: Original strand, 44852658 - 44852986
Alignment:
| Q |
2 |
ggatgtcgaagaatatggtacaacgtctcaccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaa |
101 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
44852658 |
ggatgtcga-gaacatggtacaacggctcaccccaaatgccaacaagatataccatctctctggtactcaaaaatttgagctgccaaaagaggaaattaa |
44852756 |
T |
|
| Q |
102 |
aatagcgaacatattccaagctgttgaagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcattaag |
201 |
Q |
| |
|
||| ||||| |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
44852757 |
aatggcgaatgtattccgagctattgaagctgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattagaagacgtcttcattaag |
44852856 |
T |
|
| Q |
202 |
gtagcacgcgaggctcgtgcatttgataccttgtcataatttgtactcaccatgca------------agttatatgcctccagagaatttgaccagtta |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| |||||||| || ||||| ||| || ||||||||||||||||||||| ||| |
|
|
| T |
44852857 |
gtagcacgcgaggctcaagcatttgataccttgacatagtttgtactgactatgcaaacaagcattggagtgatttgcctccagagaatttgaccaatta |
44852956 |
T |
|
| Q |
290 |
atatgaagtaatatatggttaaatggttct |
319 |
Q |
| |
|
|||||||||| || ||||||| |||||||| |
|
|
| T |
44852957 |
atatgaagtagtacatggttagatggttct |
44852986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 28 - 246
Target Start/End: Original strand, 44901819 - 44902037
Alignment:
| Q |
28 |
ctcaccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaaaatagcgaacatattccaagctgttg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
44901819 |
ctcaccccaaatgccaacaagatataccatctctctggtactcagaaatttgagcttccaaaagaggatgttaaaatagcaaatgtatttcaagctgttg |
44901918 |
T |
|
| Q |
128 |
aagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcattaaggtagcacgcgaggctcgtgcatttga |
227 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
44901919 |
aagttgcaaaaagaaactttactgttttcgcatggggtttagctgacaccacattagaagatgtctttattaaggtagcacgcgaggctcatgcgtttga |
44902018 |
T |
|
| Q |
228 |
taccttgtcataatttgta |
246 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44902019 |
taccttgtcataatttgta |
44902037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 44841320 - 44841560
Alignment:
| Q |
2 |
ggatgtcgaagaatatggtacaacgtctcaccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaa |
101 |
Q |
| |
|
||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
44841320 |
ggatgtcga-gaacattgtacaacgcctcaccccaaatgccaacaagatataccatctctctggtactctgaaatttgagctgccaaaagaggatgttaa |
44841418 |
T |
|
| Q |
102 |
aatagcgaacatattccaagctgttgaagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcattaag |
201 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44841419 |
aatagcaaatgtatttcaagctgttgaagttgcaaaaagaaacttcaccgttattgcatggggtttatctgacacaacattggaagatgtcttcattaag |
44841518 |
T |
|
| Q |
202 |
gtagcacgcgaggctcgtgcatttgataccttgtcataattt |
243 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||| ||||||| |
|
|
| T |
44841519 |
gtagcacgtgaggctcaagcatttgatacattgcaataattt |
44841560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 44867123 - 44867353
Alignment:
| Q |
25 |
cgtctcaccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaaaatagcgaacatattccaagctg |
124 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| |||||||| || |||||||||||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
44867123 |
cgtctcaccccaaatgccaacaggatataccgtctctctggcactcagaagttcgagctgccaaaaaaggaagttaaaatagcgaatgtattccaagctg |
44867222 |
T |
|
| Q |
125 |
ttgaagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcattaaggtagcacgcgaggctcgtgcatt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
44867223 |
ttgaagttgcaaaaagaaacttcactgtttttgcatggggtttagccgacaccacattagaagatgtctttattaaggtagcacacgaggctgaggcatt |
44867322 |
T |
|
| Q |
225 |
tgataccttgtcataatttgtactcaccatgc |
256 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| |
|
|
| T |
44867323 |
tgataccttgtcataattt-tactcactatgc |
44867353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 243
Target Start/End: Complemental strand, 12923056 - 12922845
Alignment:
| Q |
32 |
ccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaaaatagcgaacatattccaagctgttgaagt |
131 |
Q |
| |
|
|||||||||| || ||||| |||||| |||| || ||||| || |||||||| |||||||| || ||||||||| | || |||||||||| |||||| |
|
|
| T |
12923056 |
ccccaaatgctaagaagatttaccatatctcaggaactcaaaagtttgagctaccaaaagatgaggttaaaatatctaatgtattccaagcagttgaaac |
12922957 |
T |
|
| Q |
132 |
tgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcattaaggtagcacgcgaggctcgtgcatttgatacc |
231 |
Q |
| |
|
|||||| ||||| ||| | |||| |||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||| |||| |
|
|
| T |
12922956 |
tgcaaagagaaatttcccagtttctgcatggggtttagctgacaccacattggaagatgtattcattaaggttgcacgtgaggctcagccatttcatact |
12922857 |
T |
|
| Q |
232 |
ttgtcataattt |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12922856 |
ttgtcataattt |
12922845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University