View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20796_high_7 (Length: 241)

Name: NF20796_high_7
Description: NF20796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20796_high_7
NF20796_high_7
[»] chr4 (4 HSPs)
chr4 (8-241)||(10782402-10782635)
chr4 (8-150)||(5529028-5529171)
chr4 (45-149)||(11520536-11520640)
chr4 (31-82)||(13587856-13587908)
[»] chr3 (6 HSPs)
chr3 (31-186)||(27853923-27854080)
chr3 (30-119)||(20885790-20885879)
chr3 (40-150)||(22245888-22245998)
chr3 (45-150)||(820923-821028)
chr3 (116-150)||(16221955-16221989)
chr3 (45-93)||(314709-314757)
[»] chr1 (8 HSPs)
chr1 (45-150)||(26810460-26810565)
chr1 (33-150)||(17442814-17442932)
chr1 (112-151)||(28008704-28008743)
chr1 (112-150)||(17120970-17121008)
chr1 (112-150)||(18100474-18100512)
chr1 (112-150)||(25960628-25960666)
chr1 (45-82)||(16787149-16787186)
chr1 (33-93)||(17837886-17837947)
[»] chr6 (4 HSPs)
chr6 (45-154)||(9726593-9726700)
chr6 (45-93)||(9291479-9291527)
chr6 (45-82)||(2587364-2587401)
chr6 (45-106)||(22564371-22564432)
[»] chr7 (7 HSPs)
chr7 (8-131)||(13708088-13708212)
chr7 (66-147)||(5798099-5798180)
chr7 (45-154)||(15612081-15612190)
chr7 (45-150)||(11218691-11218796)
chr7 (8-93)||(5530723-5530809)
chr7 (31-82)||(9721589-9721641)
chr7 (61-93)||(10649927-10649959)
[»] chr8 (5 HSPs)
chr8 (22-237)||(5855593-5855811)
chr8 (8-81)||(30486867-30486941)
chr8 (45-150)||(17977198-17977303)
chr8 (51-150)||(15064772-15064871)
chr8 (47-93)||(24381220-24381266)
[»] chr2 (6 HSPs)
chr2 (24-150)||(25348591-25348718)
chr2 (45-150)||(45553720-45553825)
chr2 (45-192)||(25939679-25939828)
chr2 (23-91)||(41789974-41790043)
chr2 (33-150)||(21072158-21072276)
chr2 (45-207)||(26291602-26291766)
[»] scaffold0672 (1 HSPs)
scaffold0672 (33-150)||(4462-4580)
[»] scaffold0136 (1 HSPs)
scaffold0136 (8-154)||(14857-15005)
[»] chr5 (6 HSPs)
chr5 (25-192)||(23265674-23265844)
chr5 (33-150)||(19762660-19762778)
chr5 (8-145)||(26314273-26314411)
chr5 (45-89)||(24164445-24164489)
chr5 (54-149)||(35984860-35984957)
chr5 (19-150)||(26066719-26066851)
[»] scaffold0019 (1 HSPs)
scaffold0019 (45-93)||(183888-183936)
[»] scaffold0128 (1 HSPs)
scaffold0128 (112-150)||(63-101)
[»] scaffold0043 (1 HSPs)
scaffold0043 (113-154)||(89321-89362)
[»] scaffold0360 (1 HSPs)
scaffold0360 (45-109)||(17540-17604)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 10782635 - 10782402
Alignment:
Q  8 tgatgcatatgtgctaaaatctggaagtaactattaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacc 107  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10782635 tgatgcatatctgctaaaatctggaagcaactattagtaattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacc 10782536  T
Q  108 tcaataaggtagacactaatagggctgctcgtttgtagaactatcgaaagagagtatgatatatgcttttaatattcatagatgaaaggaccttgaggaa 207  Q
    || ||||| |||||| | |||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||    
T  10782535 tcgataagatagacattgataaagctgctcgtttgtagaactatcgaaagagagtatgatatatgcttctaatattcatagatggaaggacctttaggaa 10782436  T
Q  208 gatcgagattacaatgttggcaatttaggacaat 241  Q
    ||||||||||||||||||||||||||||||||||    
T  10782435 gatcgagattacaatgttggcaatttaggacaat 10782402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 5529171 - 5529028
Alignment:
Q  8 tgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcac 106  Q
    |||||||||| |||| | ||  ||||||||||| |||  ||||||| ||||||| |||||||||||||||||||   |||||| |||  |||||||||||    
T  5529171 tgatgcatatatgctgagattaggaagtaactagttagcaattaagtaaacaggcgacttcatgacttaaatcaatccagtaattccattcttctttcac 5529072  T
Q  107 ctcaataaggtagacactaatagggctgctcgtttgtagaacta 150  Q
    ||   ||||||| || ||||||||||| | ||||||| ||||||    
T  5529071 cttggtaaggtaaacgctaatagggctacccgtttgttgaacta 5529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 11520536 - 11520640
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 144  Q
    |||||||| |||||  |||||| | ||||| ||||||| ||||||||||  ||||||| |||||   |||||||||| || |||||| || |||||||||    
T  11520536 taattaaggaaacaattgacttaacgacttcaatcagcccagtaactccattcttcttgcacctttctaaggtagacgctgatagggttgttcgtttgta 11520635  T
Q  145 gaact 149  Q
    |||||    
T  11520636 gaact 11520640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 13587908 - 13587856
Alignment:
Q  31 gaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagc 82  Q
    |||||||||| ||| |||||||||||||||  ||||||| |||||||||||||    
T  13587908 gaagtaactagttagtaattaagaaaacagacgacttcacgacttaaatcagc 13587856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 27853923 - 27854080
Alignment:
Q  31 gaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatag 129  Q
    |||||||||| ||| ||||| || |||||||| |||||| |||||||||||||  ||||||||| ||| ||||||||||  ||||||||||| |||||||    
T  27853923 gaagtaactagttagtaatttaggaaacaggttacttcacgacttaaatcagcctagtaactccactcatctttcaccttgataaggtagacgctaatag 27854022  T
Q  130 ggctgctcgtttgtagaactatcga-aagagagtatgatatatgcttttaatattcat 186  Q
    |||| |||||||||||||||||||| | |||||| || ||| ||||| ||| ||||||    
T  27854023 ggcttctcgtttgtagaactatcgagaggagagtgtgttatgtgcttctaagattcat 27854080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 20885879 - 20885790
Alignment:
Q  30 ggaagtaactattaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtag 119  Q
    ||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||| |||||||||| ||||| |||||||||  ||||||||    
T  20885879 ggaagtaactagtaataattaaggaaacaagtgacttcacgactgaaatcagcccagtaactccactcttttttcacctcggtaaggtag 20885790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 22245998 - 22245888
Alignment:
Q  40 attaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgt 139  Q
    |||| |||||||| |||||  |||||||| ||||||||||||||||||||||||  ||| || ||||||   | ||||||||||| |||||||| | |||    
T  22245998 attagtaattaaggaaacaattgacttcacgacttaaatcagctcagtaactccattctcctctcaccttggtgaggtagacactgatagggctacccgt 22245899  T
Q  140 ttgtagaacta 150  Q
    |||||||||||    
T  22245898 ttgtagaacta 22245888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 820923 - 821028
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 144  Q
    |||||||| ||||| |||||||||  |||||||||||| ||||||||||  ||||||| ||| |   |||||||||| || |||| ||| | ||||||||    
T  820923 taattaaggaaacaagtgacttcacaacttaaatcagcccagtaactccattcttcttgcacattcgtaaggtagacgctgatagagcttcccgtttgta 821022  T
Q  145 gaacta 150  Q
    ||||||    
T  821023 gaacta 821028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 16221989 - 16221955
Alignment:
Q  116 gtagacactaatagggctgctcgtttgtagaacta 150  Q
    ||||||||| |||||||||||||||||||||||||    
T  16221989 gtagacactgatagggctgctcgtttgtagaacta 16221955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 314757 - 314709
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 93  Q
    |||||||| ||||| ||||||||||||||||||| ||  ||||||||||    
T  314757 taattaaggaaacaagtgacttcatgacttaaattagtccagtaactcc 314709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 26810565 - 26810460
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 144  Q
    |||||||||||||| ||| ||||||||||||||||| |  ||||||||||||||| ||||||| |  ||||||||||| | ||| | |||| ||||||||    
T  26810565 taattaagaaaacatgtgccttcatgacttaaatcaacctagtaactccgctcttttttcaccacggtaaggtagacattgataagactgcccgtttgta 26810466  T
Q  145 gaacta 150  Q
    ||||||    
T  26810465 gaacta 26810460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 17442932 - 17442814
Alignment:
Q  33 agtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaataggg 131  Q
    |||||||| ||| |||||||||||||||||||||||| ||||||||| ||| ||||||||  | | |||||| ||||   |||||||||| || ||||||    
T  17442932 agtaactagttagtaattaagaaaacaggtgacttcaggacttaaataagcccagtaactttgtttttcttttaccttggtaaggtagacgctgataggg 17442833  T
Q  132 ctgctcgtttgtagaacta 150  Q
     | | ||||||||||||||    
T  17442832 tttcccgtttgtagaacta 17442814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 28008743 - 28008704
Alignment:
Q  112 taaggtagacactaatagggctgctcgtttgtagaactat 151  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  28008743 taaggtagacactgatagggctgcccgtttgtagaactat 28008704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 17120970 - 17121008
Alignment:
Q  112 taaggtagacactaatagggctgctcgtttgtagaacta 150  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  17120970 taaggcagacactaataggggtgctcgtttgtagaacta 17121008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 18100474 - 18100512
Alignment:
Q  112 taaggtagacactaatagggctgctcgtttgtagaacta 150  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  18100474 taaggtagacactgatagggctgcttgtttgtagaacta 18100512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 25960628 - 25960666
Alignment:
Q  112 taaggtagacactaatagggctgctcgtttgtagaacta 150  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  25960628 taaggtagacactgatagggctgctagtttgtagaacta 25960666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 16787149 - 16787186
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagc 82  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  16787149 taattaaggaaacaagtgacttcatgacttaaatcagc 16787186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 17837947 - 17837886
Alignment:
Q  33 agtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 93  Q
    |||||||| ||| |||||||| ||||| ||||||||| ||||||||||| | ||||||||||    
T  17837947 agtaactagttagtaattaaggaaacaagtgacttcacgacttaaatcatcccagtaactcc 17837886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 9726700 - 9726593
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 144  Q
    |||||||| ||||| ||||||||| ||||||| ||||  ||  ||||||  |||||||||||||  ||||||||||| || |||||||||| ||||||||    
T  9726700 taattaaggaaacatgtgacttcacgacttaactcagaccacgaactccattcttctttcacct--ataaggtagacgctgatagggctgcccgtttgta 9726603  T
Q  145 gaactatcga 154  Q
    ||||||||||    
T  9726602 gaactatcga 9726593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 9291479 - 9291527
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 93  Q
    |||||||| ||||| ||||||||||||||||||||||| || |||||||    
T  9291479 taattaaggaaacaagtgacttcatgacttaaatcagcccaataactcc 9291527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 2587401 - 2587364
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagc 82  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  2587401 taattaaggaaacaagtgacttcatgacttaaatcagc 2587364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 22564371 - 22564432
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcac 106  Q
    |||||||| ||||| |||| |||| ||||||||||||| || ||||||| | ||||||||||    
T  22564371 taattaagcaaacatgtgatttcacgacttaaatcagcacaataactccacccttctttcac 22564432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 13708212 - 13708088
Alignment:
Q  8 tgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcac 106  Q
    ||||| |||| ||||| || | ||||||||||| ||| ||||| || ||| | ||||||||| ||||||||| |||||||||||||| ||||| ||||||    
T  13708212 tgatgtatatatgctagaaccaggaagtaactagttagtaattgaggaaataagtgacttcacgacttaaataagctcagtaactccactcttgtttcac 13708113  T
Q  107 ctcaataaggtagacactaataggg 131  Q
    ||   ||||||||||||| ||||||    
T  13708112 cttggtaaggtagacactgataggg 13708088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 5798180 - 5798099
Alignment:
Q  66 tcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgtagaa 147  Q
    ||||||||||||| |||  ||||||||||| ||| |||||||||| ||| |||||| ||||||| | ||| |||||||||||    
T  5798180 tcatgacttaaattagcaaagtaactccgcccttatttcacctcagtaaagtagacgctaatagtgttgcccgtttgtagaa 5798099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 15612081 - 15612190
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 144  Q
    |||||||| ||||| ||||||| |  |||||||||| ||| ||||||||  | |||||||||||   ||| |||||| || |||||||| | ||||||||    
T  15612081 taattaaggaaacatgtgactttacaacttaaatcaactcggtaactccatttttctttcaccttggtaaagtagacgctgatagggctacccgtttgta 15612180  T
Q  145 gaactatcga 154  Q
    ||||||||||    
T  15612181 gaactatcga 15612190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 11218691 - 11218796
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 144  Q
    |||||||| ||||| | ||||||||||||||||||||| |||| |||||  ||| ||  |||||   ||||||| || || |||||||| | ||||||||    
T  11218691 taattaaggaaacaagcgacttcatgacttaaatcagcccagttactccattctcctcgcaccttggtaaggtatacgctgatagggcttcccgtttgta 11218790  T
Q  145 gaacta 150  Q
    ||||||    
T  11218791 gaacta 11218796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 5530809 - 5530723
Alignment:
Q  8 tgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 93  Q
    ||||||| || |||| ||||| || |||||||| ||| |||||||| ||||| ||| ||||| ||||||||||||| || |||||||    
T  5530809 tgatgcaaatctgctgaaatcaggcagtaactagttagtaattaaggaaacaagtggcttcacgacttaaatcagcccaataactcc 5530723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 9721641 - 9721589
Alignment:
Q  31 gaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagc 82  Q
    |||||||||| ||| |||||||||||||||  ||||||| |||||||||||||    
T  9721641 gaagtaactagttagtaattaagaaaacagacgacttcacgacttaaatcagc 9721589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 10649959 - 10649927
Alignment:
Q  61 tgacttcatgacttaaatcagctcagtaactcc 93  Q
    ||||||||||||||||||||||||||| |||||    
T  10649959 tgacttcatgacttaaatcagctcagtgactcc 10649927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 5855811 - 5855593
Alignment:
Q  22 taaaatctggaagtaactattaa-taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtaga 120  Q
    ||||||| |||| |||||||| | |||||||| ||||| |||||||   ||||||||| ||| ||||||||||||| ||||||||||||  |||||| ||    
T  5855811 taaaatcaggaattaactatttagtaattaaggaaacaagtgactttgcgacttaaattagcccagtaactccgcttttctttcacctcggtaaggtgga 5855712  T
Q  121 cactaatagggctgctcgtttgtagaactatcgaaa--gagagtatgatatatgcttttaatattcatagatgaaaggaccttgaggaagatcgagatta 218  Q
    | ||  || || ||| ||||||||||||||  || |  |||||| || ||| ||||| ||| ||||||| |||   ||||||| | |||||||| || ||    
T  5855711 cgctggtaaggttgcccgtttgtagaactactgagagggagagtgtgttatgtgcttctaagattcataaatggtcggacctttatgaagatcgggacta 5855612  T
Q  219 caatgttggcaatttagga 237  Q
    || || ||| |||||||||    
T  5855611 cactgatggaaatttagga 5855593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 30486941 - 30486867
Alignment:
Q  8 tgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcag 81  Q
    |||| ||||| |||| ||||| || |||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  30486941 tgattcatatctgctgaaatcaggtagtaactaattagtaattaagaaaacacgtgacttcatgacttaaatcag 30486867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 17977303 - 17977198
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 144  Q
    |||||| ||||||| ||||||||| |||||||||||||  |||||||||  ||| ||| |||||   ||||| |||| || |||||||| | ||||||||    
T  17977303 taattatgaaaacaagtgacttcacgacttaaatcagcctagtaactccattctccttgcaccttggtaaggcagacgctgatagggcttcccgtttgta 17977204  T
Q  145 gaacta 150  Q
     |||||    
T  17977203 aaacta 17977198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 15064772 - 15064871
Alignment:
Q  51 agaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgtagaacta 150  Q
    |||||||||| ||||||| |||||| ||||||  || | |||| |||||||||||||    |||||||||| || ||| ||||||  |||||||||||||    
T  15064772 agaaaacaggcgacttcacgacttagatcagcctagcatctccactcttctttcaccatggtaaggtagacgctgataaggctgcctgtttgtagaacta 15064871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 24381220 - 24381266
Alignment:
Q  47 attaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 93  Q
    |||||| ||||| |||||||||||||||||||||||  |||||||||    
T  24381220 attaagtaaacaagtgacttcatgacttaaatcagccaagtaactcc 24381266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 25348718 - 25348591
Alignment:
Q  24 aaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagaca 122  Q
    ||||| ||||||||||| ||| |||||   || ||||||||||||| ||||||||||||| |||||||| |  ||| ||   |||||  ||||||||||     
T  25348718 aaatcaggaagtaactagttagtaatttgaaagacaggtgacttcacgacttaaatcagcccagtaacttcattctcctcgaacctcggtaaggtagacg 25348619  T
Q  123 ctaatagggctgctcgtttgtagaacta 150  Q
    || |||||||||||||||||||||||||    
T  25348618 ctgatagggctgctcgtttgtagaacta 25348591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 45553825 - 45553720
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 144  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||  ||| ||  |||||   |||||||| | || |||||||||| | ||||||    
T  45553825 taattaaggaaacaagtgacttcatgacttaaatcagcacagtaactccattctcctcacaccttggtaaggtagtcgctgatagggctgcccatttgta 45553726  T
Q  145 gaacta 150  Q
    ||||||    
T  45553725 gaacta 45553720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 25939828 - 25939679
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 144  Q
    |||||||| ||||| ||||||||||||||||||| ||  |||||| |||  ||| |||||||||   |||||||||| || ||||| || | ||||||||    
T  25939828 taattaaggaaacatgtgacttcatgacttaaataagtccagtaattccattctcctttcaccttggtaaggtagacgctgataggtctccccgtttgta 25939729  T
Q  145 gaactatcgaaa--gagagtatgatatatgcttttaatattcatagatga 192  Q
    |||||| ||| |  |||||| |  ||| | ||||||| ||||||||||||    
T  25939728 gaactaccgagagggagagtgttctatgttcttttaagattcatagatga 25939679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 41789974 - 41790043
Alignment:
Q  23 aaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaact 91  Q
    |||||| ||||||||||| ||| |||||||  ||||| ||||||||||||||||| ||||||||||||||    
T  41789974 aaaatcaggaagtaactagttagtaattaatgaaacatgtgacttcatgacttaactcagctcagtaact 41790043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 21072158 - 21072276
Alignment:
Q  33 agtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaataggg 131  Q
    |||||||| ||| ||||| || ||||| |||||||||||||||||||||||  |||||||||  ||| ||   |||||  |||||||||   | ||||||    
T  21072158 agtaactagttagtaattgaggaaacaagtgacttcatgacttaaatcagcctagtaactccattctcctcatacctcggtaaggtagatgatgataggg 21072257  T
Q  132 ctgctcgtttgtagaacta 150  Q
    ||| ||||| |||||||||    
T  21072258 ctggtcgttagtagaacta 21072276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 26291766 - 26291602
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 144  Q
    |||||||| ||||| ||||||||| ||||||||||||| || |||||||  ||| ||  ||| |   |||||||||| || |||||||||   |||||||    
T  26291766 taattaaggaaacaagtgacttcacgacttaaatcagcccaataactccattctcctcacactttggtaaggtagacgctcatagggctgtcagtttgta 26291667  T
Q  145 gaactatc--gaaagagagtatgatatatgcttttaatattcatagatgaaaggaccttgaggaa 207  Q
     ||||| |  ||| |||||| || ||| | ||| ||| |||||||||||| || ||||| |||||    
T  26291666 aaactaccgagaaggagagtgtgttatgtacttctaagattcatagatgagagaacctttaggaa 26291602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 4580 - 4462
Alignment:
Q  33 agtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaataggg 131  Q
    |||||||| ||| |||||||| ||||| ||||||||||||||||||||||| || ||||| |  ||| ||  |||||  ||||||||||  |||||||||    
T  4580 agtaactagttagtaattaaggaaacaagtgacttcatgacttaaatcagcccaataacttcattctcctcgcaccttgataaggtagatgctaataggg 4481  T
Q  132 ctgctcgtttgtagaacta 150  Q
    |||| ||| ||||||||||    
T  4480 ctgcccgtgtgtagaacta 4462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 14857 - 15005
Alignment:
Q  8 tgatgcatatgtgctaaaatctggaagtaactatt--aataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttca 105  Q
    |||||||||| |||||||||| |||| | |||| |  | |||||||| ||||| |||||||||  || |||||||||   |||||| |||||||||||||    
T  14857 tgatgcatatatgctaaaatcaggaattcactagttgagtaattaaggaaacatgtgacttcacaacctaaatcagccatgtaacttcgctcttctttca 14956  T
Q  106 cctcaataaggtagacactaatagggctgctcgtttgtagaactatcga 154  Q
    ||||  |||||||||  || |||||| ||   |||||||||||||||||    
T  14957 cctcggtaaggtagatgctgatagggatgactgtttgtagaactatcga 15005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 23265844 - 23265674
Alignment:
Q  25 aatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacac 123  Q
    |||| ||||||| ||| ||| |||||||| ||||| ||||||||| ||||||||||||| || ||||| |  ||| |||||||||   |||||||||       
T  23265844 aatcaggaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgt 23265745  T
Q  124 taatagggctgctcgtttgtagaactatcgaaa--gagagtatgatatatgcttttaatattcatagatga 192  Q
    | |||||| |||||||||||||||||| ||| |  |||||| || ||| ||||| ||| |||| |||||||    
T  23265744 tgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatga 23265674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 19762660 - 19762778
Alignment:
Q  33 agtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaataggg 131  Q
    |||||||| ||| |||||||| ||||| ||||||||| | ||||||||||| || |||||||  ||||||| |||||   |||||||||| || ||||||    
T  19762660 agtaactagttagtaattaaggaaacaagtgacttcacgtcttaaatcagcccaataactccattcttcttgcaccttggtaaggtagacgctgataggg 19762759  T
Q  132 ctgctcgtttgtagaacta 150  Q
    |||  |||||| |||||||    
T  19762760 ctgtccgtttggagaacta 19762778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 26314411 - 26314273
Alignment:
Q  8 tgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcac 106  Q
    ||||||| || |||| |||||||| ||||| || ||| |||||||| ||||| |||||||||  |||||||||||   || ||||||  ||| ||  |||    
T  26314411 tgatgcagatctgctgaaatctggtagtaagtagttagtaattaaggaaacaagtgacttcacaacttaaatcagtctagcaactccattctcctcgcac 26314312  T
Q  107 ctcaataaggtagacactaatagggctgctcgtttgtag 145  Q
    || | |||||||||| || |||||||||| |||||||||    
T  26314311 cttagtaaggtagacgctgatagggctgcccgtttgtag 26314273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 24164445 - 24164489
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaa 89  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||    
T  24164445 taattaaggaaacaagtgacttcatgacttaaatcagcccagtaa 24164489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 35984860 - 35984957
Alignment:
Q  54 aaacaggtgacttcatgacttaaatcagctcagtaact--ccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgtagaact 149  Q
    ||||| ||||||||||| ||||||||||| ||  ||||  || |||||||||||||| | |||| ||||| || |||||| ||| ||||||| |||||    
T  35984860 aaacaagtgacttcatggcttaaatcagcccaacaactttccactcttctttcaccttagtaagatagacgctgatagggttgcccgtttgttgaact 35984957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 26066851 - 26066719
Alignment:
Q  19 tgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggt 117  Q
    |||| ||||| || |||||||| ||| || ||||| ||||| || |||||| ||||||||||||   |||||||||  ||| ||  |||||   |||| |    
T  26066851 tgctgaaatcaggtagtaactaattagtacttaaggaaacaagttacttcacgacttaaatcagtgtagtaactccattctcctcgcaccttggtaagtt 26066752  T
Q  118 agacactaatagggctgctcgtttgtagaacta 150  Q
    |||| || |||||||||| ||||||||||||||    
T  26066751 agacgctgatagggctgcccgtttgtagaacta 26066719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 183888 - 183936
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 93  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  183888 taattaaggaaacaagtgacttcatgacttaaatcagcccagtaactcc 183936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 63 - 101
Alignment:
Q  112 taaggtagacactaatagggctgctcgtttgtagaacta 150  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  63 taaggtagacactaatagggcttcccgtttgtagaacta 101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 89321 - 89362
Alignment:
Q  113 aaggtagacactaatagggctgctcgtttgtagaactatcga 154  Q
    |||||||||| |||||||||||| ||||||| ||||||||||    
T  89321 aaggtagacagtaatagggctgcccgtttgtggaactatcga 89362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 17540 - 17604
Alignment:
Q  45 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctc 109  Q
    |||||||| ||||| ||||||||  ||| ||||| ||| || |||||||||| ||||||||||||    
T  17540 taattaaggaaacaagtgacttcgcgacataaattagcccaataactccgcttttctttcacctc 17604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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