View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20796_low_4 (Length: 306)

Name: NF20796_low_4
Description: NF20796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20796_low_4
NF20796_low_4
[»] chr7 (4 HSPs)
chr7 (1-301)||(36348911-36349218)
chr7 (185-301)||(36360175-36360288)
chr7 (23-100)||(36360452-36360529)
chr7 (116-145)||(26253172-26253201)
[»] chr2 (3 HSPs)
chr2 (117-149)||(13027830-13027862)
chr2 (115-148)||(25084200-25084233)
chr2 (116-144)||(14958692-14958720)
[»] chr4 (2 HSPs)
chr4 (116-155)||(33975331-33975370)
chr4 (116-148)||(39767019-39767051)
[»] chr1 (2 HSPs)
chr1 (57-104)||(21186489-21186536)
chr1 (116-148)||(46917274-46917306)
[»] chr8 (1 HSPs)
chr8 (116-148)||(42309905-42309937)
[»] chr6 (1 HSPs)
chr6 (116-148)||(18153709-18153741)
[»] chr3 (3 HSPs)
chr3 (116-156)||(20915875-20915915)
chr3 (116-156)||(20924837-20924877)
chr3 (116-144)||(35317635-35317663)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 36349218 - 36348911
Alignment:
Q  1 tcaagcaaaacacatgtggcctttcaagttcacttcaaatatttaatgtcagtgattatggagctaaaggggatggtaaaactgatgacacgcaggtata 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36349218 tcaagcaaaacacatgtggcctttcaagttcacttcaaatttttaatgtcagtgattatggagctaaaggggatggtaaaactgatgacacacaggtata 36349119  T
Q  101 tataacacactcatcatttatagggaccaaaaacatatttaattcaaatcataatatactcatttgttcccatgcgggataca----caatattcaggca 196  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     ||||||||||||    
T  36349118 tataatacactcatcatttatagagaccaaaaacatatttaattcaaatcataatatactcatctgttcccatgcgggatacataattaatattcaggca 36349019  T
Q  197 ttcgagaagacttgggaagcagtatgttcttc---aggaggggaagcagtttttgttgcacctcaagataatatttatctactcaaaccaatcagattct 293  Q
    ||||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36349018 ttcgagaaggcttgggaagcagtatgttcttcaggaggaggggaagcagtttttgttgcacctcaagataatatttatctactcaaaccaatcagattct 36348919  T
Q  294 ctgctcct 301  Q
    ||| ||||    
T  36348918 ctggtcct 36348911  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 36360288 - 36360175
Alignment:
Q  185 aatattcaggcattcgagaagacttgggaagcagtatgttcttcaggaggggaagcagtttttgttgcacctcaagataatatttatctactcaaaccaa 284  Q
    ||||||||||||||| ||||| ||||||||| ||||||||| |||||   | || ||||||| || |||||||||||| ||| |||||||||||||||||    
T  36360288 aatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagg---gcaatcagttttagtggcacctcaagattataattatctactcaaaccaa 36360192  T
Q  285 tcagattctctgctcct 301  Q
    |||||||||||| ||||    
T  36360191 tcagattctctggtcct 36360175  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 36360529 - 36360452
Alignment:
Q  23 ttcaagttcacttcaaatatttaatgtcagtgattatggagctaaaggggatggtaaaactgatgacacgcaggtata 100  Q
    |||| |||||||| ||||  ||||||| || |||||||||||||||||||||||| | || |||||||| ||||||||    
T  36360529 ttcacgttcacttaaaattgttaatgttagagattatggagctaaaggggatggtcatacggatgacacacaggtata 36360452  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 26253201 - 26253172
Alignment:
Q  116 atttatagggaccaaaaacatatttaattc 145  Q
    ||||||||||||||||||||||||||||||    
T  26253201 atttatagggaccaaaaacatatttaattc 26253172  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 13027830 - 13027862
Alignment:
Q  117 tttatagggaccaaaaacatatttaattcaaat 149  Q
    |||||||||||||||||||||||||||||||||    
T  13027830 tttatagggaccaaaaacatatttaattcaaat 13027862  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 25084200 - 25084233
Alignment:
Q  115 catttatagggaccaaaaacatatttaattcaaa 148  Q
    |||||||||||||||||||||||||||| |||||    
T  25084200 catttatagggaccaaaaacatatttaactcaaa 25084233  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 14958692 - 14958720
Alignment:
Q  116 atttatagggaccaaaaacatatttaatt 144  Q
    |||||||||||||||||||||||||||||    
T  14958692 atttatagggaccaaaaacatatttaatt 14958720  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 33975331 - 33975370
Alignment:
Q  116 atttatagggaccaaaaacatatttaattcaaatcataat 155  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  33975331 atttatagggaccaaaaacatatttaacccaaatcataat 33975370  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 39767019 - 39767051
Alignment:
Q  116 atttatagggaccaaaaacatatttaattcaaa 148  Q
    ||||||||||||||||||||||||||| |||||    
T  39767019 atttatagggaccaaaaacatatttaactcaaa 39767051  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 21186536 - 21186489
Alignment:
Q  57 tatggagctaaaggggatggtaaaactgatgacacgcaggtatatata 104  Q
    ||||||||| |||| ||||||||||||||||||||  |||||||||||    
T  21186536 tatggagctcaaggagatggtaaaactgatgacacaaaggtatatata 21186489  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 46917306 - 46917274
Alignment:
Q  116 atttatagggaccaaaaacatatttaattcaaa 148  Q
    ||||||||||||||||||||||||||| |||||    
T  46917306 atttatagggaccaaaaacatatttaactcaaa 46917274  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 42309905 - 42309937
Alignment:
Q  116 atttatagggaccaaaaacatatttaattcaaa 148  Q
    |||||||||||||||||||||||||||| ||||    
T  42309905 atttatagggaccaaaaacatatttaatccaaa 42309937  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 18153741 - 18153709
Alignment:
Q  116 atttatagggaccaaaaacatatttaattcaaa 148  Q
    ||||||||||||||||||||||||||| |||||    
T  18153741 atttatagggaccaaaaacatatttaactcaaa 18153709  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 20915875 - 20915915
Alignment:
Q  116 atttatagggaccaaaaacatatttaattcaaatcataata 156  Q
    |||||||||||||||||||||||||||  ||||| ||||||    
T  20915875 atttatagggaccaaaaacatatttaacccaaataataata 20915915  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 20924837 - 20924877
Alignment:
Q  116 atttatagggaccaaaaacatatttaattcaaatcataata 156  Q
    |||||||||||||||||||||||||||  ||||| ||||||    
T  20924837 atttatagggaccaaaaacatatttaacccaaataataata 20924877  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 35317635 - 35317663
Alignment:
Q  116 atttatagggaccaaaaacatatttaatt 144  Q
    |||||||||||||||||||||||||||||    
T  35317635 atttatagggaccaaaaacatatttaatt 35317663  T

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