View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20796_low_5 (Length: 255)

Name: NF20796_low_5
Description: NF20796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20796_low_5
NF20796_low_5
[»] chr4 (3 HSPs)
chr4 (5-235)||(10779696-10779929)
chr4 (5-235)||(10973305-10973538)
chr4 (27-91)||(10782148-10782212)
[»] scaffold0155 (2 HSPs)
scaffold0155 (18-168)||(34304-34454)
scaffold0155 (16-121)||(26075-26180)
[»] chr6 (13 HSPs)
chr6 (19-144)||(8843070-8843195)
chr6 (16-164)||(8647426-8647574)
chr6 (16-124)||(8507707-8507815)
chr6 (19-137)||(8514430-8514548)
chr6 (16-113)||(8548760-8548857)
chr6 (16-113)||(8625474-8625571)
chr6 (19-144)||(8527302-8527427)
chr6 (19-144)||(8541062-8541187)
chr6 (16-92)||(5082778-5082854)
chr6 (39-103)||(8627453-8627517)
chr6 (16-75)||(8834279-8834338)
chr6 (89-145)||(8830511-8830567)
chr6 (89-145)||(8834221-8834277)
[»] chr8 (1 HSPs)
chr8 (16-112)||(4538678-4538774)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 10779929 - 10779696
Alignment:
Q  5 tgtcgaagaatatgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtag---atctt 101  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||   |||||    
T  10779929 tgtcgaagtaaatgtcatttgcaaagaagcctcaaatccttcatattgcttaaatcttctcaactcaaagccaggaggagcaaaaggtgtagtagatctt 10779830  T
Q  102 gttcaccttgcatattacacaatcgctgtgcttaataacaattgtaccaacacagttaacctattaagtgaattggttaaaagtgcaaactattatcaaa 201  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  10779829 gttcaccttgcatattacacaattgatgtgcttaataacaattgtaccaacacatttaacctattaaatgaattggttaaaagtgcaaactattatcaaa 10779730  T
Q  202 tatgttcagatgaattatctggccttgatagtgt 235  Q
    |||||||||||||||||||||||| ||| |||||    
T  10779729 tatgttcagatgaattatctggccctgagagtgt 10779696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 10973538 - 10973305
Alignment:
Q  5 tgtcgaagaatatgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtag---atctt 101  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||   |||||    
T  10973538 tgtcgaagtaaatgtcatttgcaaagaagcctcaaatccttcatattgcttaaatcttctcaactcaaagccaggaggagcaaaaggtgtagtagatctt 10973439  T
Q  102 gttcaccttgcatattacacaatcgctgtgcttaataacaattgtaccaacacagttaacctattaagtgaattggttaaaagtgcaaactattatcaaa 201  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  10973438 gttcaccttgcatattacacaattgatgtgcttaataacaattgtaccaacacatttaacctattaaatgaattggttaaaagtgcaaactattatcaaa 10973339  T
Q  202 tatgttcagatgaattatctggccttgatagtgt 235  Q
    |||||||||||||||||||||||| ||| |||||    
T  10973338 tatgttcagatgaattatctggccctgagagtgt 10973305  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 10782212 - 10782148
Alignment:
Q  27 aaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaagg 91  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||||| ||  | ||||||||||    
T  10782212 aaagaagcctccaatccttcatattgcttaaatcttctcaactcaaagtcaggaagagcaaaagg 10782148  T

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Target: scaffold0155 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 34304 - 34454
Alignment:
Q  18 gtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcatatt 117  Q
    |||||||| ||||||||| | ||||||||||||||  ||||||||||||||||||| |||  | ||| ||||||||||||||||||| |||||||| | |    
T  34304 gtcatttgtaaagaagcccccaatccttcatattgcttaaatcttctcaactcaaaaccaggacgagtaaaaggtgtagatcttgttaaccttgcagagt 34403  T
Q  118 acacaatcgctgtgcttaataacaattgtaccaacacagttaacctattaa 168  Q
    ||||||| | |||||| ||| ||||||| || |||||| ||||||| ||||    
T  34404 acacaattgatgtgctcaatgacaattggacaaacacatttaacctcttaa 34454  T

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Target: scaffold0155; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 26180 - 26075
Alignment:
Q  16 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcata 115  Q
    |||| |||||||||||||| || |||||||||||||||  |||||| |||||||||||||||  ||||||||||  ||||||||||||| | |||||| |    
T  26180 atgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatcttgttgatcttgcaaa 26081  T
Q  116 ttacac 121  Q
    ||||||    
T  26080 ttacac 26075  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 8843070 - 8843195
Alignment:
Q  19 tcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcatatta 118  Q
    ||||||||||||||||||| |||||| | ||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||||| | |||||| | ||    
T  8843070 tcatttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaata 8843169  T
Q  119 cacaatcgctgtgcttaataacaatt 144  Q
    |||||| | |||||||||| ||||||    
T  8843170 cacaattgatgtgcttaatgacaatt 8843195  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 8647574 - 8647426
Alignment:
Q  16 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcata 115  Q
    |||||||||||| ||||||||| |||||| ||||||||  |||||||||||||||||||| |  ||| ||||||||||||||||||||  |||||||| |    
T  8647574 atgtcatttgcagagaagcctccaatcctacatattgttcaaatcttctcaactcaaagcaaggaggtgcaaaaggtgtagatcttgtcgaccttgcaga 8647475  T
Q  116 ttacacaatcgctgtgcttaataacaattgtaccaacacagttaaccta 164  Q
     |||||||| | |||||||| | | ||||| |||||||||  |||||||    
T  8647474 atacacaattgatgtgcttagtgagaattggaccaacacatataaccta 8647426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 8507815 - 8507707
Alignment:
Q  16 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcata 115  Q
    |||||||||||||||||||||| |||||||||| ||||  |||||||||||||||||| |||  | |||||||| |||||||||||||| | |||||| |    
T  8507815 atgtcatttgcaaagaagcctccaatccttcattttgttcaaatcttctcaactcaaaaccaggatgagcaaaaagtgtagatcttgttgatcttgcaca 8507716  T
Q  116 ttacacaat 124  Q
     ||||||||    
T  8507715 atacacaat 8507707  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 8514430 - 8514548
Alignment:
Q  19 tcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcatatta 118  Q
    ||||||||||||||||||| ||||  || |||||   ||||||||||||||| ||||||  ||| ||||||||||||||||||||| |||||||| | ||    
T  8514430 tcatttgcaaagaagcctctaatcaatcgtattgctcaaatcttctcaactcgaagccaggaggtgcaaaaggtgtagatcttgttgaccttgcacaata 8514529  T
Q  119 cacaatcgctgtgcttaat 137  Q
    |||||| | ||||||||||    
T  8514530 cacaattgatgtgcttaat 8514548  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 8548760 - 8548857
Alignment:
Q  16 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgca 113  Q
    ||||||| ||||| ||||| || |||||||||||||||    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||    
T  8548760 atgtcatctgcaatgaagcttccaatccttcatattgttcgtatcttctcaactcaaagccaggaggagcaaaaggtgtagatcttgtccaccttgca 8548857  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 8625571 - 8625474
Alignment:
Q  16 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgca 113  Q
    ||||||| ||||| ||||| || |||||||||||||||  | ||||||||||||||||||||  |||||||||||| ||||||||||| |||||||||    
T  8625571 atgtcatctgcaatgaagcttccaatccttcatattgttcatatcttctcaactcaaagccaggaggagcaaaaggcgtagatcttgtccaccttgca 8625474  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 8527302 - 8527427
Alignment:
Q  19 tcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcatatta 118  Q
    |||||||||||||||| || |||||||| |||||   |||||||||||| || ||||||  ||| ||||||||||||||||||||  ||||||||   ||    
T  8527302 tcatttgcaaagaagcatccaatccttcgtattgctcaaatcttctcaattcgaagccaggaggtgcaaaaggtgtagatcttgtcgaccttgcacgata 8527401  T
Q  119 cacaatcgctgtgcttaataacaatt 144  Q
    |||||| | |||||||||||| ||||    
T  8527402 cacaattgatgtgcttaataataatt 8527427  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 8541187 - 8541062
Alignment:
Q  19 tcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgcatatta 118  Q
    |||||||||||||||| || |||||||| |||||   |||||||||||| || ||||||  ||| ||||||||||||||||||||  ||||||||   ||    
T  8541187 tcatttgcaaagaagcatccaatccttcgtattgctcaaatcttctcaattcgaagccaggaggtgcaaaaggtgtagatcttgtcgaccttgcacgata 8541088  T
Q  119 cacaatcgctgtgcttaataacaatt 144  Q
    |||||| | |||||||||||| ||||    
T  8541087 cacaattgatgtgcttaataataatt 8541062  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 5082778 - 5082854
Alignment:
Q  16 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggt 92  Q
    |||||||||||||||||||||| ||||  |||||||||  ||||||||||||||||||||||  |||||||||||||    
T  5082778 atgtcatttgcaaagaagcctccaatcaatcatattgttcaaatcttctcaactcaaagccaggaggagcaaaaggt 5082854  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 8627453 - 8627517
Alignment:
Q  39 aatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgt 103  Q
    |||||||||||||||  ||||||||||||||||||||||   || ||||||||||||||||||||    
T  8627453 aatccttcatattgttcaaatcttctcaactcaaagccagttggtgcaaaaggtgtagatcttgt 8627517  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 8834338 - 8834279
Alignment:
Q  16 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagc 75  Q
    |||||||||||| |||| ||||  ||| ||||||||||  ||||||||||||||||||||    
T  8834338 atgtcatttgcagagaatcctccgatcattcatattgttcaaatcttctcaactcaaagc 8834279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 8830567 - 8830511
Alignment:
Q  89 aggtgtagatcttgttcaccttgcatattacacaatcgctgtgcttaataacaattg 145  Q
    |||||||||||||||  |||||||| | |||||||| | |||||| |||||||||||    
T  8830567 aggtgtagatcttgtgaaccttgcacaatacacaattgatgtgctcaataacaattg 8830511  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 8834277 - 8834221
Alignment:
Q  89 aggtgtagatcttgttcaccttgcatattacacaatcgctgtgcttaataacaattg 145  Q
    |||||||||||||||  |||||||| | |||||||| | |||||| |||||||||||    
T  8834277 aggtgtagatcttgtgaaccttgcacaatacacaattgatgtgctcaataacaattg 8834221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 4538678 - 4538774
Alignment:
Q  16 atgtcatttgcaaagaagcctcaaatccttcatattgtataaatcttctcaactcaaagccaaaaggagcaaaaggtgtagatcttgttcaccttgc 112  Q
    |||||||||||||||||||||| ||||  |||||||||  ||||||||||||||||||||||  |||||||||||||| |||||||||  |||||||    
T  4538678 atgtcatttgcaaagaagcctccaatcaatcatattgttcaaatcttctcaactcaaagccaggaggagcaaaaggtgcagatcttgtcgaccttgc 4538774  T

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