View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20796_low_6 (Length: 253)
Name: NF20796_low_6
Description: NF20796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20796_low_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 36349508 - 36349274
Alignment:
| Q |
19 |
ggcatttcgtctgaatctcttatacctaactatacttccatacccatatagcaatttccttgttatatataatattctcatcaaacaactttcaaaatca |
118 |
Q |
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| T |
36349508 |
ggcatttcctctgaatctcttatatcaaactatacttccatacccatatagcaatttccttgttatatataatattctcatcaaacaactttcaaaatca |
36349409 |
T |
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| Q |
119 |
atatatatagtaaatacaaaagggaggaaattaactataatggctctcctaagacatttcctcctctcatccactatcgtcatcatttcatttgctgctt |
218 |
Q |
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| T |
36349408 |
ataaatatagtaaatacaaaagggaggaaattaactataatggctctcctaagacatttcctcctctcatccactatcgtcatcatttcatttgctgctt |
36349309 |
T |
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| Q |
219 |
gcagtagctacttccaagaggttccacttattact |
253 |
Q |
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| T |
36349308 |
gcagtagctacttccaagagtttccacttattact |
36349274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 36360756 - 36360640
Alignment:
| Q |
137 |
aaagggaggaaattaactataatggctctcctaagacatttcctcctctcatccactatcgtcatcatttcatttgctgcttgcagtagctacttccaag |
236 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||| |||| |
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| T |
36360756 |
aaagggaagaaattaactataatggccctcctaagacatttcctcctctcattcactatcgtcatcatttcatttgttgcttgcaatagcaacttgcaag |
36360657 |
T |
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| Q |
237 |
aggttccacttattact |
253 |
Q |
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| T |
36360656 |
aggacccacttattact |
36360640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 36361011 - 36360962
Alignment:
| Q |
19 |
ggcatttcgtctgaatctcttatacctaactatacttccatacccatata |
68 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||| ||||| |
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| T |
36361011 |
ggcatttcgtctcaatctcttatacctaactaaacttccataccgatata |
36360962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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