View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20797_high_1 (Length: 483)
Name: NF20797_high_1
Description: NF20797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20797_high_1 |
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| [»] scaffold0236 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 2631638 - 2631185
Alignment:
| Q |
18 |
ggattaagggaatctgtaagtaggtagaccacatctgtttctctagaaattaaactgtaaaacaggcggtaatgcattgagcagccacaaaaataacaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631638 |
ggattaagggaatctgtaagtaggtagaccacatctgtttctctagaaattaaactgtaaaacaggcggtaatgcattgagcagccacaaaaataacaat |
2631539 |
T |
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| Q |
118 |
agggttgacctctttcccccaaagcacccaaagatttggcatcaaaggacctttatcattaatacaatatctcgtcaccccaatactttgccattaccaa |
217 |
Q |
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| T |
2631538 |
agggttgacctctttcccccaaagcacccaaagatttggcatcaaaggacctttatcattaatacaatatctcgtcaccccaatactttgccattaccaa |
2631439 |
T |
|
| Q |
218 |
gaaggaacttgcacaaacgtaatcatggttccgcaaggaaaaataacatgggtttatgagacataaataattttttaaagcaactctagaatccgagtta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631438 |
gaaggaacttgcacaaacgtaatcatggttccgcaaggaaaaataacatgggtttatgagacataaataattttttaaagcaactctagaatccgagtta |
2631339 |
T |
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| Q |
318 |
ccaataccccacacattccaataaaaaatattcattgggcagttggagaggagtcccgcctagaacgggttagatacggcgacttcccaagcacttgggc |
417 |
Q |
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| T |
2631338 |
ccaataccccacacattccaataaaaaatattcattgggcagttggagaggagtcccacctagaacgggttagatacggcgacttccgaagcacttgggc |
2631239 |
T |
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| Q |
418 |
ttgtttcaatttatgtttatgtttcttcgaaagaactagtgtgaaagacaccta |
471 |
Q |
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| T |
2631238 |
ttgtttcaatttatgtttatgtttcttcgaaagaactagtgtgaaagacaccta |
2631185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 291 - 464
Target Start/End: Original strand, 5569635 - 5569806
Alignment:
| Q |
291 |
tttaaagcaactctagaatccgagttaccaataccccacacattccaataaaaaatattcattgggcagttggagaggagtcccgcctagaacgggttag |
390 |
Q |
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| T |
5569635 |
tttaaagcaattctagaatccgagttactaatacctcacacattccaataaaaaat--tcattgagcagttggagaggagtcccccccagaacgggttcg |
5569732 |
T |
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| Q |
391 |
atacggcgacttcccaagcacttgggcttgtttcaatttatgtttatgtttcttcgaaagaactagtgtgaaag |
464 |
Q |
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| T |
5569733 |
atacgacggcttcccaagaacctggacttgcttcaattactgtatttgtttctttgaaagaactggtgtgaaag |
5569806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 21460652 - 21460564
Alignment:
| Q |
268 |
ggtttatgagacataaataattttttaaagcaactctagaatccgagttaccaataccccacacattccaataaaaaatattcattggg |
356 |
Q |
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| T |
21460652 |
ggtttatgcgacaaaaataaatttttaaagcaagccgagtatcggaattaccaataccgcgaacattccaatagagaacattcattggg |
21460564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 286 - 470
Target Start/End: Complemental strand, 6116 - 5933
Alignment:
| Q |
286 |
aattttttaaagcaactctagaatccgagttaccaataccccacacattccaataaaaaatattcattgggcagttggagaggagtcccgcctagaacgg |
385 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||| || |||||||| |||| ||||| |
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| T |
6116 |
aattatttaaagcaactctagaatccgagttaccaatacctcgcacattccaataaaaaatatttattgagcagttgaagtggagtccc-cctataacgg |
6018 |
T |
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| Q |
386 |
gttagatacggcgacttcccaagcacttgggcttgtttcaatttatgtttatgtttcttcgaaagaactagtgtgaaagacacct |
470 |
Q |
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| T |
6017 |
gtttgatgtagcggcttcccaagaacctatgcttgtttcaatttttgttgttgtttatttgaaagaactggagtgaaagaaacct |
5933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 6303 - 6237
Alignment:
| Q |
20 |
attaagggaatctgtaagtaggtagaccacatctgtttctctagaaattaaactgtaaaacaggcggtaat |
90 |
Q |
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| T |
6303 |
attaagggaatctgtaagtagg--caccacatatgtt--tctagaaatcaaagtgtaaaacaggcagtaat |
6237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 293
Target Start/End: Complemental strand, 25219462 - 25219302
Alignment:
| Q |
134 |
ccccaaagcacccaaagatttggcatcaaaggacctttatcattaatacaatatctcgtcaccccaatactttgccattaccaagaaggaacttgcacaa |
233 |
Q |
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|||||||| |||||||||| |||||||| | || ||||||| ||||||||| ||| ||||| |||||||| ||| |||||||||||||| || ||| |
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| T |
25219462 |
ccccaaagtgcccaaagattcggcatcaatgattctctatcatttatacaatatttcgacaccctaatacttttccaataccaagaaggaacgagctcaa |
25219363 |
T |
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| Q |
234 |
acgtaatcat-ggttccgcaaggaaaaataacatgggtttatgagacataaataatttttt |
293 |
Q |
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| T |
25219362 |
aagaaatcatcggctccgcaataaaaactaacaacggtttatgtgacaaaaataatttttt |
25219302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 413
Target Start/End: Complemental strand, 19552977 - 19552824
Alignment:
| Q |
261 |
taacatgggtttatgagacataaataat-tttttaaagcaactctagaatccgagttaccaataccccacacattccaataaaaaatattcattgggcag |
359 |
Q |
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|||||| |||||||||||||||||||| ||||||| |||| ||| ||| ||||| |||||||| | |||||||| |||| | |||||||||||| |
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| T |
19552977 |
taacattggtttatgagacataaataaaatttttaacgcaagtcttatatcagagttgccaatacctcgaacattccagtaaaggacattcattgggcat |
19552878 |
T |
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| Q |
360 |
ttggagaggagtcccgcctagaacgggttagatacggcgacttcccaagcactt |
413 |
Q |
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| T |
19552877 |
atggagaggggtcaccccttgagcgggttcgatatggcggcttcccaagtactt |
19552824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 15894977 - 15895037
Alignment:
| Q |
19 |
gattaagggaatctgtaagtaggtagaccacatctgtttctctagaaattaaactgtaaaa |
79 |
Q |
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| T |
15894977 |
gattaagagaatctgtaaataggcagaccacatctgtctctatagaaatcaaagtgtaaaa |
15895037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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