View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20797_high_10 (Length: 257)
Name: NF20797_high_10
Description: NF20797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20797_high_10 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0340 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 6440602 - 6440842
Alignment:
| Q |
10 |
aagaaaattctgtctttagcgtaaaaaatgtcaacagttgttgcatgctacaatggtcacacatttttgtagcactaacataagcttcnnnnnnnaagta |
109 |
Q |
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| T |
6440602 |
aagaaaattctgtcttcagcgtaaaaaatgtcaacagttgttgcatgctacaatggtcacacatttttgtagcactaacataagcttctttttttaagta |
6440701 |
T |
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| Q |
110 |
tagttgtaacttgtaacataagcttaaatatattttttattttagtaaatataatataatcagtagttgagactgacagttcctttcatttatgtgtgaa |
209 |
Q |
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| T |
6440702 |
tagttgt-------aacataagcttaaatacattttttattttagtaaatataatataatcagtagttgagactgacagttcctttcatttatgtgtgaa |
6440794 |
T |
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| Q |
210 |
gacgtggttctcttaatctactttttatatatttgtctcttaacttgt |
257 |
Q |
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| T |
6440795 |
gacgtggttctcttaatttactttttatatatttgtctcttaacttgt |
6440842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 23768714 - 23768645
Alignment:
| Q |
10 |
aagaaaattctgtctttagcgtaaaaaatgtcaacagttgttgcatgctacaatggtcacacatttttgt |
79 |
Q |
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| T |
23768714 |
aagaaaaatatgtcttcagcgtaaaaaatgtcaacagttgttgaatgctacaatggtcacacatttttgt |
23768645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 23767897 - 23767798
Alignment:
| Q |
143 |
tttttattttagtaaatataatataatcag-tagttgagactgacagttcctttcatttatgtgtgaagacgtggttctctt-aatctactttttatata |
240 |
Q |
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| T |
23767897 |
tttttattttagtagatattttataaaaaggtagttgagaccgacagttcctttcttttatgtgtgaagacgtggttctcttaaatctacattttatata |
23767798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 11211 - 11328
Alignment:
| Q |
120 |
ttgtaacataagcttaaatatattttttattttagtaaatataatataatcagtagttgagactgacagttcctttcatttatgtgtgaagacgtggttc |
219 |
Q |
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| T |
11211 |
ttgtaacataagcttaaatatatttt-tattttagtagatattttataataggtagttgagactaacggttcctttcatttatgtgtgaagacgtggttc |
11309 |
T |
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| Q |
220 |
tcttaatctactttttata |
238 |
Q |
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| T |
11310 |
tcttaatctattttatata |
11328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 11132 - 11209
Alignment:
| Q |
10 |
aagaaaattctgtctttagcgtaaaa-aatgtcaacagttgttgcatgctacaatggtcacacatttttgtagcacta |
86 |
Q |
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||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||| |
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| T |
11132 |
aagaaaaatctgtcttcagcgtaaaaaaatgtcaacagttgttacatgctacaatggccacacatttttgttgcacta |
11209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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