View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20797_high_5 (Length: 385)
Name: NF20797_high_5
Description: NF20797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20797_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 41928215 - 41928581
Alignment:
| Q |
18 |
ataattgggattgttgtacgtatctgccatgcacattttcttttcccaatgtatgcgaggtccatttttgtcc-----------------acaagctctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41928215 |
ataattgggattgttgtacgtatctgccatgcacattttcttttcccaatgtatgcgaggtccatttttgtcctcaagttctttttgtccacaagctctt |
41928314 |
T |
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| Q |
101 |
tgcatagttggagtctttttgcattaccatgcatataaaccnnnnnnnggtatatataccttttaaaaacacttatttctgactaagtgtttaattttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41928315 |
tgcatagttggagtctttttgcattaccatgcatataaacctttttttggtatatataccttttaaaaacacctatttctgactaagtgtttaattttct |
41928414 |
T |
|
| Q |
201 |
ctcactctcattgattatacacatactatactcaaactgtttaatgtagatcatgaaaagaaacatattagtaaaacaaagagtgctattatttatagct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41928415 |
ctcactctcattgattatacacatactatactcaaactgtttaatgaagttcatgaaaagaaacatattagtaaaacaaatagtgctattatttatagct |
41928514 |
T |
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| Q |
301 |
agcaagcatttatgtctggattttgnnnnnnnt--tataactgctgcttcacgccaattatatataa |
365 |
Q |
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||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
41928515 |
agcaagcatttatgtttggattttgaaaaaaattatataactgctgcttcacgccaattatatataa |
41928581 |
T |
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