View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20797_high_6 (Length: 361)
Name: NF20797_high_6
Description: NF20797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20797_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 340
Target Start/End: Original strand, 40968431 - 40968768
Alignment:
| Q |
12 |
catcatcacggtagtcatcttttgctaaatgcaccttgtatccaaagtcaggagaggcttccagtcctatagagggtagcaaaaggaactctggttgtgc |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40968431 |
catcatcgcggtagtcatcttttgctaaatgcaccttgtatccaaagtcaggagaggcttccagtcctatagagggtagcaaaaggaactctggttgtgc |
40968530 |
T |
|
| Q |
112 |
cgattttgaagaatcctgctactannnnnnnnnnggattcacacatttagaatattggtggtcattcgatcaagatcaaactatccaaaacaagctttat |
211 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40968531 |
cgattttgaagaattctgctactagaaattttttggattcacacgtttagaatattggtggtcattcgatcaagatcaaactatccaaatcaagctttat |
40968630 |
T |
|
| Q |
212 |
att----tatatcataaaataaaaaataagaaatgcattgtttatacggtcattttaaccgaacaaatctaatttctcaaatgtataaagtagaaatcca |
307 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
40968631 |
atttatttatatcataaaataaaaattaagaaatgcattgtttaaacactcattttaaccgaacaaattcaatttctcaaatgtataaagtggaaatccg |
40968730 |
T |
|
| Q |
308 |
aattccctt-----acgtgtctaggaaaatgaatcgaa |
340 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
40968731 |
aattcccttgtgtcacgtgtctaggaaaatgaatcgaa |
40968768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University