View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20797_high_7 (Length: 350)
Name: NF20797_high_7
Description: NF20797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20797_high_7 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 41929061 - 41928712
Alignment:
| Q |
10 |
catcatcatctcctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcctgtgg------ |
103 |
Q |
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| T |
41929061 |
catcatcatctcctaaaattgcacccatttctgttgggtcggtaagcacggaatttggatccaatggaaaattatgagcttgaaaatcctgtggcggcgg |
41928962 |
T |
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| Q |
104 |
---tggaggtggaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagccc |
200 |
Q |
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| T |
41928961 |
tggtggaggtggaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatattgagcatagtcatcaaagccc |
41928862 |
T |
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| Q |
201 |
aatttttgcatagtagctaacaaatcttcagcagtaattgttgttctacaatctaacttgcaataatggttagcctcagcggtaacaaagctaatgaatt |
300 |
Q |
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| T |
41928861 |
aatttttgcatagtagctaacaaatcttcagcagtaattgttgttctacaatctaacttgcaataatggttagcctcagcggtaacaaagctaataaatt |
41928762 |
T |
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| Q |
301 |
cagctgcatatttcaccataatttccttgctttcatcggttatctttgca |
350 |
Q |
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| T |
41928761 |
cagctgcatatttcaccataatttccttgctttcatcggttatctttgca |
41928712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 41938291 - 41938037
Alignment:
| Q |
10 |
catcatcatctcctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcctgtgg------ |
103 |
Q |
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| T |
41938291 |
catcaccatctcctaaaattgcacccatttctgttgggtcggcaaacatgaaattcggatccaatggaaaattatgagcttgaaaatcctgtggcggcgg |
41938192 |
T |
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| Q |
104 |
---tggaggtggaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagccc |
200 |
Q |
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| T |
41938191 |
tggtggaggtggaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaataccgagcatagtcatcaaagccc |
41938092 |
T |
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| Q |
201 |
aatttttgcatagtagctaacaaatcttcagcagtaattgttgttctacaatcta |
255 |
Q |
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| T |
41938091 |
aatttttgcatagtagctaacaaatcttcagcagtaattgttgttctacaatcta |
41938037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 10 - 347
Target Start/End: Complemental strand, 41911315 - 41910977
Alignment:
| Q |
10 |
catcatcatctcctaaaattgcacacatttctgttgggtcggcaaacatgaaatttggatccaatggaaaattatgagcttgaaaatcctgtggtgga-- |
107 |
Q |
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| T |
41911315 |
catcatcatcatctaaaattgcacccatttctgttgggtcggcaagcacgaaatttggatccaatggaaaattatgagcctgaaaatcctgtggcggcag |
41911216 |
T |
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| Q |
108 |
-ggtggaggtgggggagcatattgacctacacgagcaccatgacgaaaaagttggatgtagcggaaggaatactgagcatagtcatcaaagcccaatttt |
206 |
Q |
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| T |
41911215 |
tggtggaggtgggggagcgtattgacttacgcgagcacgatggcaaaaaagttggatgtagcggagggaacacgcagcatagacatcaaaacccaatttt |
41911116 |
T |
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| Q |
207 |
tgcatagtagctaacaaatcttcagcagtaattgttgttctacaatctaacttgcaataatgg--ttagcctcagcggtaacaaagctaatgaattcagc |
304 |
Q |
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| T |
41911115 |
tgcatactaattaacaaatcttcagcagtaattgttgtcctataatctaaattgcaataatggttttggtctcagcagtaacaaagctaatgaattcagc |
41911016 |
T |
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| Q |
305 |
tgcatatttcaccataatttccttgctttcatcggttatcttt |
347 |
Q |
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| T |
41911015 |
tg----gttcaccataatttccttgctttcatcggttatcttt |
41910977 |
T |
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Back To:
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