View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20797_low_12 (Length: 236)
Name: NF20797_low_12
Description: NF20797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20797_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 7970422 - 7970642
Alignment:
| Q |
1 |
aatttagtaattatatttacaattt-ctcatggcttacaaaatatgttgttggcgcaaaagcaaatcctccaaaaaatcccaagaggccaccgaaaaatg |
99 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7970422 |
aatttagtaattatatttacaattttctcatggcttacaaaatatgttgttggcgcaaaagcaaatcctccaaaaaatcctaagaggccaccgaaaaatg |
7970521 |
T |
|
| Q |
100 |
ggaaggtaatggcaatgaacattgttaatgctgaaagnnnnnnncaatgcaaatattaatatttgaaatt-aaaaatcaaagttgtacactactttattt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
7970522 |
ggaaggtaatggcaatgaacattgttaatgctgaaagaaaaaaacaatgcaaatattaatatttgtcgttaaaaaatcaaagttgtacactactttattt |
7970621 |
T |
|
| Q |
199 |
cacttacccacgtatacatta |
219 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
7970622 |
cacttacccacgtatacatta |
7970642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8043286 - 8043067
Alignment:
| Q |
1 |
aatttagtaattatatttacaatttctcatggcttacaaaatatgttgttggcgcaaaagcaaatcctccaaaaaatcccaagaggccaccgaaaaatgg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8043286 |
aatttagtaattacatttacaatttctcatggcttacataatatgttgctggagcaaaagcaaatcctccaaaaaatcctaagaggccaccgaaaaatgg |
8043187 |
T |
|
| Q |
101 |
gaaggtaatggcaatgaacattgttaatgctgaaagnnnnnnncaatgcaaatattaatatttgaaatt-aaaaatcaaagttgtacactactttatttc |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
8043186 |
gaaggtaatggcaatgaacattgttaatgctgaaagaaaaaaacaatgcaaatattaatatttgtcgttaaaaaatcaaagttgtacactactttatttc |
8043087 |
T |
|
| Q |
200 |
acttacccacgtatacatta |
219 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
8043086 |
acttacccacgtatacatta |
8043067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 8033341 - 8033216
Alignment:
| Q |
10 |
attatatttacaatttctcatggcttacaaaatatgttgttggcgcaaaagcaaatcctccaaaaaatcccaagaggccaccgaaaaatgggaaggtaat |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
8033341 |
attatatttacaatttttcatggcttacaaaatatgttgttggagcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaat |
8033242 |
T |
|
| Q |
110 |
ggcaatgaacattgttaatgctgaaa |
135 |
Q |
| |
|
|||||||||||||| |||||||||| |
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|
| T |
8033241 |
agcaatgaacattgtgaatgctgaaa |
8033216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 7977223 - 7977329
Alignment:
| Q |
29 |
atggcttacaaaatatgttgttggcgcaaaagcaaatcctccaaaaaatcccaagaggccaccgaaaaatgggaaggtaatggcaatgaacattgttaat |
128 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||||| ||||||||||||| ||||| |||||||||||||| ||| |
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|
| T |
7977223 |
atggcttacaaagtatgttgttggagcaaaagcaaaccctccaaaaaaccctagaaggccatcgaaaaatgggaatgtaatagcaatgaacattgtgaat |
7977322 |
T |
|
| Q |
129 |
gctgaaa |
135 |
Q |
| |
|
||||||| |
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|
| T |
7977323 |
gctgaaa |
7977329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 41380852 - 41380986
Alignment:
| Q |
1 |
aatttagtaattatatttacaatttctcatggcttacaaaatatgttgttggcgcaaaagcaaatcctccaaaaaatcccaagaggccaccgaaaaatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
41380852 |
aatttagtaattatatttacaatttctcatggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgg |
41380951 |
T |
|
| Q |
101 |
gaaggtaatggcaatgaacattgttaatgctgaaa |
135 |
Q |
| |
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|||||||||||| | |||||||||||||||||||| |
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|
| T |
41380952 |
gaaggtaatggctaagaacattgttaatgctgaaa |
41380986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 41381037 - 41381090
Alignment:
| Q |
167 |
attaaaaatc-aaagttgtacactactttatttcacttacccacgtatacatta |
219 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41381037 |
attaaaaatccaaagttgtacactactttatttcacttacccacgtatacatta |
41381090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 43855252 - 43855151
Alignment:
| Q |
33 |
cttacaaaatatgttgttggcgcaaaagcaaatcctccaaaaaatcccaagaggccaccgaaaaatgggaaggtaatggcaatgaacattgttaatgctg |
132 |
Q |
| |
|
||||||||||||||||| || ||||| || ||||||||||||||||| | ||| |||| || ||||||||||| ||| | | |||||||| ||||||| |
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|
| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgggaaggttatgcccacaaacattgtgaatgctg |
43855153 |
T |
|
| Q |
133 |
aa |
134 |
Q |
| |
|
|| |
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|
| T |
43855152 |
aa |
43855151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 14197281 - 14197373
Alignment:
| Q |
32 |
gcttacaaaatatgttgttggcgcaaaagcaaatcctccaaaaaatcccaagaggccaccgaaaaatgggaaggtaatggcaatgaacattgt |
124 |
Q |
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|
||||||||| ||||||||||| |||||||||||||| ||||||||||| | || ||||||||||| || || ||||| ||||||||||||| |
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| T |
14197281 |
gcttacaaagtatgttgttggagcaaaagcaaatccaccaaaaaatcctagtagaccaccgaaaaacggaaaagtaataccaatgaacattgt |
14197373 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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