View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20797_low_2 (Length: 418)
Name: NF20797_low_2
Description: NF20797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20797_low_2 |
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| [»] chr6 (5 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 7970050 - 7970457
Alignment:
| Q |
13 |
atcatcattgtcaagggaagttgcaacttggttatgataacaaagttaggtgatcaagagtaaaactggtaggtcttggcatcaagtataatactcctca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7970050 |
atcatcattgtcaagggaagttgcaacttggttatgataacaaagttaggtgatcaagagtaaaactggtaggtcttggcttcaagtataatactcctca |
7970149 |
T |
|
| Q |
113 |
atgctccaatgggtgctaaaatcattatacataccccaagaacaatacatatctgtaacatatggagcaaatattaaacatgtgcttataacattaataa |
212 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7970150 |
atgctccaatgggtgctaaaatcattatgcataccccaagaacaatacatatctgtaatatatggagcaaatattaaacatgtgcttataacattaataa |
7970249 |
T |
|
| Q |
213 |
attattcaagaacttagag-gnnnnnnnntgcaataattaaagatacctacccaattaatccaccaagataagctgaatctttttggtttgtagagttta |
311 |
Q |
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|||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7970250 |
attattcaagaacttaaagaaaaaaaaaatacaataattaaagatacctacccaattaatccaccaagataagctgaatctttttggtttgtagagttta |
7970349 |
T |
|
| Q |
312 |
agccacatgatacatggaagctggaaatttaatagaatgaaaagttaagcaagattatgattatactaagaaaatttagtaactatatttacaa-tttct |
410 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
7970350 |
agccacatgatacatggaagctgaaaatttaatagaatgaaaagttaagcaagattatgattatcctaagaaaatttagtaattatatttacaattttct |
7970449 |
T |
|
| Q |
411 |
catggctt |
418 |
Q |
| |
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|||||||| |
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| T |
7970450 |
catggctt |
7970457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 418
Target Start/End: Complemental strand, 8043658 - 8043252
Alignment:
| Q |
14 |
tcatcattgtcaagggaagttgcaacttggttatgataacaaagttaggtgatcaagagtaaaactggtaggtcttggcatcaagtataatactcctcaa |
113 |
Q |
| |
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||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8043658 |
tcatcattgtccagggaagttgtaacttcgttataataacaaagttaggtgatcaagagtaaaactggtaggtcttggcttcaagtataatactcctcaa |
8043559 |
T |
|
| Q |
114 |
tgctccaatgggtgctaaaatcattatacataccccaagaacaatacatatctgtaacatatggagcaaatattaaacatgtgcttat-aacattaataa |
212 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8043558 |
tgctccaatgggtgctagaaccattatacataccccaagaacaacacatatctgtaacatatggagcaaatattaaacatgtgcttataaacattaataa |
8043459 |
T |
|
| Q |
213 |
attattcaagaacttagag-gnnnnnnnntgcaataattaaagatacctacccaattaatccaccaagataagctgaatctttttggtttgtagagttta |
311 |
Q |
| |
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|||||||||||||||| || | |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
8043458 |
attattcaagaacttaaagaagaaaaaaatacaataattaaagatgcctacccaattaatccaccaagacaagctgaatctctttggtttgtagagttta |
8043359 |
T |
|
| Q |
312 |
agccacatgatacatggaagctggaaatttaatagaatgaaaagttaagcaagattatgattatactaagaaaatttagtaactatatttacaatttctc |
411 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |
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| T |
8043358 |
agccacacaatacatggaagctgaaaatttaatagaatgaaaagttaagcaagattatgattatcctaagaaaatttagtaattacatttacaatttctc |
8043259 |
T |
|
| Q |
412 |
atggctt |
418 |
Q |
| |
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||||||| |
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| T |
8043258 |
atggctt |
8043252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 8033723 - 8033316
Alignment:
| Q |
13 |
atcatcattgtcaagggaagttgcaacttggttatgataacaaagttaggtgatcaagagtaaaactggtaggtcttggcatcaagtataatactcctca |
112 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8033723 |
atcatcattgtcaagggaagttgtaacttggttatgataacaaagttaggtgatcaagagtaaaactggtaggtcttggcttcaagtataatactcctca |
8033624 |
T |
|
| Q |
113 |
atgctccaatgggtgctaaaatcattatacataccccaagaacaatacatatctgtaac-atatggagcaa--atattaaacatgtgcttataacattaa |
209 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| |||||||| |||||||||| | || |||||| | ||||||||||||| ||||||| | | |
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|
| T |
8033623 |
atgctccaatgggtgccaaaatcattatacataagccaataacaatacttatctgtaacaaaatagagcaaagaaattaaacatgtgcatataacaat-a |
8033525 |
T |
|
| Q |
210 |
taaattat-tcaagaacttagaggnnnnnnnntgcaataattaaagatacctacccaattaatccaccaagataagctgaatctttttggtttgtagagt |
308 |
Q |
| |
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|||||||| | | || || | ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| || |
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| T |
8033524 |
taaattatattataaagttgatagagaaaacaaacaataattaaagatacctacccaattagtccaccaagagaagctgaatctctttggtttgtaaagg |
8033425 |
T |
|
| Q |
309 |
ttaagccacatgatacatggaagctggaaatttaatagaatgaaaagttaagcaagattatgattatactaagaaaatttagtaactatatttacaattt |
408 |
Q |
| |
|
| |||||||||||||||||||||| ||||| ||||| ||||||||| | ||||| |||||||| || |||||||||| ||| | |||||||||||||| |
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| T |
8033424 |
attagccacatgatacatggaagct-gaaatgtaatataatgaaaagatgagcaaaattatgataatcctaagaaaatccagtgattatatttacaattt |
8033326 |
T |
|
| Q |
409 |
ctcatggctt |
418 |
Q |
| |
|
||||||||| |
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| T |
8033325 |
ttcatggctt |
8033316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 7976908 - 7976998
Alignment:
| Q |
255 |
atacctacccaattaatccaccaagataagctgaatctttttggtttgtagagtttaagccacatgatacatggaagctggaaatttaata |
345 |
Q |
| |
|
|||| |||||||||| |||||| || |||| |||| || |||||||||||| | |||||||||||||||||||||||| ||||| |||| |
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|
| T |
7976908 |
atacatacccaattagcccaccatgacaagccgaattttcttggtttgtagattgaaagccacatgatacatggaagctgaaaattcaata |
7976998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 7976721 - 7976821
Alignment:
| Q |
70 |
gagtaaaactggtaggtcttggcatcaagtataatactcctcaatgctccaatgggtgctaaaatcattatacataccccaagaacaatacatatctgta |
169 |
Q |
| |
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|||||||||| ||||||||| || | || ||| || |||||||| | ||||| || | ||||||||||| |||||| ||||| ||||| || ||||||| |
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|
| T |
7976721 |
gagtaaaacttgtaggtcttagccttaattatgattgtcctcaatccaccaataggagataaaatcattaaacatacgccaagcacaatgcagatctgta |
7976820 |
T |
|
| Q |
170 |
a |
170 |
Q |
| |
|
| |
|
|
| T |
7976821 |
a |
7976821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 68 - 418
Target Start/End: Original strand, 41380543 - 41380886
Alignment:
| Q |
68 |
aagagtaaaactggtaggtcttggcatcaagtataatactcctcaatgctccaatgggtgctaaaatcattatacataccccaagaacaatacatatctg |
167 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41380543 |
aagagtaaaactggtaggacttggcttcaaggataatactcctcaatgctccaatgggtgctagaatcattatacataccccaagaacaatacatatctg |
41380642 |
T |
|
| Q |
168 |
taacatatggagcaaatattaaacatgtgcttataacattaataaattattcaagaa-cttagaggnnnnnnnntgcaataattaaagatacctacccaa |
266 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||| | |||||| || || ||||||| |||||||||||||||||||||||||| |
|
|
| T |
41380643 |
taatatatggagcaaatattaaacatgtgctta----attataacattattaaaaaaacttagag---aaaaaatgcaataattaaagatacctacccaa |
41380735 |
T |
|
| Q |
267 |
ttaatccaccaagataagctgaatctttttggtttgtagagtttaagccacatgatacatggaagctggaaatttaatagaatgaaaagttaagcaagat |
366 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||| |
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|
| T |
41380736 |
ttaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttaatagaatgaaaagatgagtaagat |
41380835 |
T |
|
| Q |
367 |
tatgattatactaagaaaatttagtaactatatttacaatttctcatggctt |
418 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41380836 |
tatgattat-ctaagaaaatttagtaattatatttacaatttctcatggctt |
41380886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 14197141 - 14197212
Alignment:
| Q |
272 |
ccaccaagataagctgaatctttttggtttgtagagtttaagccacatgatacatggaagctggaaatttaa |
343 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| | ||||||||| || ||||| ||||| |||||||| |
|
|
| T |
14197141 |
ccaccaagacaagctgaatctccttggtttgtagattgcaagccacattatgcatggtagctgaaaatttaa |
14197212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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